BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938208
Length=1097
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53100.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superf... 1746 0.0
> AT3G53100.1 | Symbols: | GDSL-like Lipase/Acylhydrolase superfamily
protein | chr3:19684686-19686674 REVERSE LENGTH=1491
Length=1491
Score = 1746 bits (945), Expect = 0.0
Identities = 1049/1100 (95%), Gaps = 4/1100 (0%)
Strand=Plus/Plus
Query 1 TTAGACAGGAAAGAAAAGGAATGCAAGAGATGAGAGTTACGGGGTTTAGAGTTCTTCTCT 60
||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 113 TTAGACAGGAACGAAAAGGAATGCAAAAGATGAGAGTTTCGGGGTTTAGAGTTCTTCTCT 172
Query 61 TGGTTTCTTGTTTCTTCTGCATATCCAAAGGAGCTATTGTTCCTGCACTCATCATGTTTG 120
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 173 TGGTTTCTTGTTTCTTCTGCAAATCCAAAGGAGCTGTTGTTCCTGCACTCATCATGTTTG 232
Query 121 GTGACTCCATTGTTGACGTTGGCAACAACAATAACTTACTCAGCATTGTCAAATCCAACT 180
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 233 GCGACTCCATTGTTGACGTTGGCAACAACAATAACTTACTCAGCATTGTCAAATCCAACT 292
Query 181 TTCCTCCTTATGGCAGAGACTTCATCGACCAAAGACCCACCGGAAGATTCTGCAACGGAA 240
||| |||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 TTCTTCCTTACGGTAGAGACTTCATCGACCAAAGACCCACCGGAAGATTCTGCAACGGAA 352
Query 241 AACTCGCAGTAGATTTCTCAGCCGAGTACCTTGGTTTCTCTTCATACCCACCTGCATTCC 300
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 353 AACTCGCTGTAGATTTCTCAGCCGAGTACCTTGGTTTCTCTTCATACCCACCTGCATTCC 412
Query 301 TAAGCCGAGAAGCAAGTAACGAGACTCTCCTGATCGGCGCCAATTTTGCATCAGCTTCTT 360
||||||| |||||||| ||||||| | |||||||||| ||||| ||||||||||||||||
Sbjct 413 TAAGCCGGGAAGCAAGCAACGAGAATATCCTGATCGGTGCCAACTTTGCATCAGCTTCTT 472
Query 361 CAGGATACTATGATGCCACATCTGTTCCATTTGGCGCAATCTCCTTAACACGACAGCTGA 420
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 473 CAGGATACTATGATGCCACATCTGTTCCATTTGGCTCGATCTCCTTAACACGACAGCTGA 532
Query 421 GCTATTACAGGGCGTATCAAAACAGAGTAACAAGAATGATCGGGAGGGAGAATGAGCGCA 480
|||||||||||||||||||||| |||||||| |||||||||||||||| ||| | |||||
Sbjct 533 GCTATTACAGGGCGTATCAAAATAGAGTAACGAGAATGATCGGGAGGGGGAACGCGCGCA 592
Query 481 GGCTGTTCTCTAGAGCTATCCACATTTTGAGTGCGGGATCTAGCGACTTTCTTCAGAACT 540
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
Sbjct 593 TACTGTTCTCTAGAGGTATCCACATTTTGAGTGCGGGATCTAGCGACTTTCTTCAGAATT 652
Query 541 ATTACATCAATCCCCTACTCAACATCTTAAATACACCTGACCAGTTCGCTGACATTCTCA 600
||||||||||||| |||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 653 ATTACATCAATCCTCTACTCAACATCCTAAATACACCTGATCAGTTCGCTGACATTCTCC 712
Query 601 TGAGATCCTACTCAGAATTTATCCAGAATCTGTATGAACTAGGAGCAAGGAGAATCGGAG 660
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 713 TGAGATCCTTCTCAGAATTCATCCAGAATCTGTATGAACTAGGAGCAAGGAGAATCGGAG 772
Query 661 TGATATCGCTACCGCCGATGGGTTGCCTGCCTGCAGCTATCACTCTTTTCGGTGCAGGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 773 TGATATCGCTACCGCCGATGGGTTGCCTGCCTGCAGCTATCACTCTTTTCGGTGCAGGAA 832
Query 721 ACAAAAGTTGTGTTGAGAGACTGAACAACGATGCTATCATGTTCAATACCAAACTTGAGA 780
|||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||
Sbjct 833 ACAAAAGTTGTGTTGAGAGACTGAACAATGATGCTATCATGTTCAATACTAAACTTGAGA 892
Query 781 CCACAACCCAGTTATTGATGAATAGACACTCAGGTCTCAGGCTCGTCGCCTTTAATGTCT 840
|||||||| |||| ||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 893 ACACAACCCGGTTACTGATGAATAGACACTCAGGCCTCAGACTCGTCGCCTTTAATGTCT 952
Query 841 ATCAACCTTTCCTGGACATCATCACCAACCCAATTGACAATGGATTCTTTGAAACAAAAA 900
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 953 ACCAACCTTTCCTGGACATCATCACCAACCCAACTGACAATGGATTCTTTGAAACAAAAA 1012
Query 901 GGGCATGCTGCGGAACAGGAACAATAGAAACATCGTTCCTTTGCAATTCTCTATCCCTAG 960
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct 1013 GGGCATGCTGCGGAACAGGGACAATAGAAACATCGTTCCTTTGCAATTCTCTATCCTTCG 1072
Query 961 GAACGTGTGTAAATGCCACAGGATATGTGTTTTGGGATGGATTTCACCCCACAGAGGCTG 1020
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1073 GAACGTGTGTAAATGCCACAGGATATGTGTTTTGGGATGGATTTCATCCCACAGAGGCTG 1132
Query 1021 TAAACGAGCTGTTGGCTGGTCAACTACTGGGTCAAGGGATTTCTCTAATCAATTGAATTG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1133 TAAACGAGCTGTTGGCTGGTCAACTACTGGGTCAAGGGATTTCTCTAATCAATTGAATTG 1192
Query 1081 AG-T-CGT-CCAAGTTGGAT 1097
|| | | | ||| |||||||
Sbjct 1193 AGCTTCATTCCA-GTTGGAT 1211
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 53764783695
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5