BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938210
Length=694
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53120.1 | Symbols: VPS37-1 | Modifier of rudimentary (Mod(r... 1116 0.0
> AT3G53120.1 | Symbols: VPS37-1 | Modifier of rudimentary (Mod(r))
protein | chr3:19690571-19692578 REVERSE LENGTH=900
Length=900
Score = 1116 bits (604), Expect = 0.0
Identities = 659/686 (96%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 4 GGCGAATTCTAGAAACGATGTTCAATTTCTGGGGATCAAAAGACCAACAACAAGGGCAAT 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 72 GGCGAATTCTAGAAACGATGTTCAATTTCTGGGGATCAAAAGACCAACAACAAGGGCAAT 131
Query 64 CTCGTCCTCCGGAAGCTTCTTCACAGTCGCCATGGTATTCACCTTCTTTAGTCAGCTCGC 123
||||||||| ||||||||||||||||||||||||||| || ||||||||||| |||||||
Sbjct 132 CTCGTCCTCAGGAAGCTTCTTCACAGTCGCCATGGTACTCGCCTTCTTTAGTTAGCTCGC 191
Query 124 CAAGCTCATCCCGGCCTCAAACTTCAGGTCAGATTGGAGCA-AATGTTTCACCCGGTGAA 182
||||||||||||||||||||| ||||||||||||| |||| || || ||||| ||||||
Sbjct 192 CAAGCTCATCCCGGCCTCAAAGTTCAGGTCAGATTTCAGCACAA-GTATCACCGGGTGAA 250
Query 183 GCAGCTGGCATTATCGCCTTCTTGAAAGACAAAAGCGTGGATGAGCTCAGGAAGCTTCTA 242
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 251 GCAGCTGGCATTATCGTCTTCTTGAAAGACAAAAGCGTGGATGAACTCAGGAAGCTTCTC 310
Query 243 TCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAATCCAGAAT 302
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 311 TCTGACAAAGATGCGTATCAGCAATTTCTGCTCTCTCTTGACCAGGTCAAAGTCCAGAAT 370
Query 303 AATATCAAAGATGAGCTCCGCAGAGAAACATTGCAGCTAGCTAGAGAGAACTTGGAGAAG 362
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 371 AATATCAAAGATGAGCTCCGTAGAGAAACATTGCAGCTAGCTAGAGACAACTTGGAGAAG 430
Query 363 GAGCCACAGATAATGGAGCTCAGAAACCAATGCAGAATTATCCGTACAACTGAGCTTGCA 422
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 431 GAGCCACAGATAATGGAGCTCAGAAACCAATGCAGAATTATCCGTACAACTGAGCTCGCA 490
Query 423 GCCGCGCAAGAAAAGCTTAATGAGCTTGAGAGGCAAAAAGAAGAGATCCTCAAATTCTAC 482
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 491 ACTGCGCAAGAAAAGCTTAATGAGCTTGAGAGGCAAAAAGAAGAGATCCTCAAATTCTAC 550
Query 483 TCCCCTGGTTCTCTTCTTCATAAACTTCAAGAGGCTATGAATCAGGTGGATGAAGAATCC 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 551 TCCCCTGGTTCTCTTCTTCATAAACTTCAAGAGGCTATGAATCAGGTGGATGAAGAATCC 610
Query 543 GAAGCCCTGCAAGAAAAGTTCCTAGAGAAGGAGATTGACACAGTAGCATTTGTGCAGAAA 602
|||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 611 GAAGCCCTGCAAGAAAAGTTCCTAGAGAAGGAGATTGATACAGCAGCATTTGTGCAGAAA 670
Query 603 TACAAGAAGCTGCGAACTACCTATCATCGACGCGCATTGATCCATCTTGCCGCTAAAACC 662
||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 671 TACAAGAAGCTTCGTACTACCTATCATCGACGAGCATTGATCCATCTTGCCGCTAAAACG 730
Query 663 TCAAACATTTGAAATTAAAAAGCTTT 688
|||||||||||| |||||||||||||
Sbjct 731 TCAAACATTTGAGATTAAAAAGCTTT 756
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33606644343
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5