BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938222

Length=214
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53232.1 | Symbols: RTFL1, DVL20 | ROTUNDIFOLIA like 1 | chr...   324    2e-88


> AT3G53232.1 | Symbols: RTFL1, DVL20 | ROTUNDIFOLIA like 1 | chr3:19730978-19731423 
REVERSE LENGTH=446
Length=446

 Score =  324 bits (175),  Expect = 2e-88
 Identities = 189/196 (96%), Gaps = 0/196 (0%)
 Strand=Plus/Plus

Query  19   TAATGGGAGAAGAAAACATCACGAGCGGGACATGCAAGCCGTCCAAGACGTTCAAGGCGA  78
            ||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  112  TAATGGGAGAAGAGAACAGCACGAGCGGGACATGCAAGCCGTCCAAGACATTCAAGGCGA  171

Query  79   AGTGTAGCCACATGGTGAAGAAACAGCGAGCCAAGTTTTACATCCTTGGCCGTTGTATTG  138
            |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct  172  AGTGTAGCCACATGGTGAGGAAACAGCGAGCCAAGTTTTACATCCTTGGCCGTTGTCTTG  231

Query  139  CCATGTTAGTCTGCGGGCGTGGCCGTGACCGCGAGCGCGACCGTATTTTGATTTAGATCT  198
            ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||
Sbjct  232  CCATGTTAGTCTGCGGGCGTGGCCGTGACCGCGAGCGTGACCGTATATTGATTTAGATCT  291

Query  199  TTACCTTATGTTTTGT  214
            ||||||||||||||||
Sbjct  292  TTACCTTATGTTTTGT  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 9550872310


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5