BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938223
Length=292
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53235.1 | Symbols: | unknown protein; Has 9 Blast hits to ... 309 9e-84
> AT3G53235.1 | Symbols: | unknown protein; Has 9 Blast hits to
9 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 9; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:19733838-19734695 REVERSE LENGTH=345
Length=345
Score = 309 bits (167), Expect = 9e-84
Identities = 194/206 (94%), Gaps = 5/206 (2%)
Strand=Plus/Plus
Query 66 atggtggtTATGAGCTCTTTCACTGTGGAGGGAGGAGGGAGAGGGATATACACAAAAGAT 125
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTTATGAGCTCTTTAACTGTGGAGGGAGGAGGGAGAGGGATATACACAAAAGAT 60
Query 126 CAGAGGCTTCACCATGTTCAGAAGGACAGATCCGTCATTCCATCAGCAAGAGGAGTAGAC 185
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 61 CAGAGGCTTCACCATGTTCAGAAGGACAGATCCGCCATTCCATCAACAAGAGGAGTAGAC 120
Query 186 AACCACCATAACATTCCAAGACAAAACTTTGACAATTGGGGTGGCAA-CGGAGGAGAAGG 244
||||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct 121 AACCACCATAACATTCCAAGACAAAACTTTGACAATTGGGGTG-CAAACGGAGGAGGAGG 179
Query 245 CAGTGGTGG---AGACGATGGAACAG 267
||||||| ||| ||||||||||
Sbjct 180 TGGTGGTGGTGGAGAAGATGGAACAG 205
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 13471756732
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5