BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938231
Length=863
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53310.1 | Symbols: | AP2/B3-like transcriptional factor fa... 595 2e-169
> AT3G53310.1 | Symbols: | AP2/B3-like transcriptional factor
family protein | chr3:19766664-19768599 REVERSE LENGTH=1355
Length=1355
Score = 595 bits (322), Expect = 2e-169
Identities = 419/465 (90%), Gaps = 10/465 (2%)
Strand=Plus/Plus
Query 399 GAAGAAGAAGATTCATCTGATGTTGATGATGGTAGCTGTGGTGAAGATGAAGAAATCAGC 458
||||| |||||| | ||| | |||||||||||||| || |||||||||||||||||||
Sbjct 652 GAAGATGAAGATGAAGATGAAGATGATGATGGTAGCTTTGATGAAGATGAAGAAATCAGC 711
Query 459 CAGAGTCTTTATCCTATTGACGACGAAGAGACCAAAACCGATGCTGCAGTTTTTGAAGGG 518
|||||||||||||| ||| ||||||||||| |||||||||||||||||||||||||
Sbjct 712 CAGAGTCTTTATCCGATT---GACGAAGAGACTGCAACCGATGCTGCAGTTTTTGAAGGG 768
Query 519 AACTTAGACATTCAAGCTTTAACTAATCCACACTTTCCGACCAGGCTCAAGAACAGGATT 578
||||| ||| | |||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 769 AACTTGGACGTGGAAGCTTTAACTAATCCACACTTTCCGACTACGCTCAAGAACAGGATT 828
Query 579 TATGAACTGTTGATCCCAGCCAATGTGGTGAATGATAATAAGCTT-AAGTTTGG-TGATT 636
|||||||||||||||||||||||||||||||| |||||||| ||| || ||||| | | |
Sbjct 829 TATGAACTGTTGATCCCAGCCAATGTGGTGAAGGATAATAACCTTGAA-TTTGGTTCA-T 886
Query 637 CCGTCAAGTACATTGATGGAGAAGGGACATTAGTAGGGCTAAAAGGAAAATGGGCTGATA 696
|| |||||||||| ||||||||||| || ||||||||||||| |||||||||||||||||
Sbjct 887 CCATCAAGTACATCGATGGAGAAGGAACCTTAGTAGGGCTAAGAGGAAAATGGGCTGATA 946
Query 697 AGAGGATTTGTTTCAAAGGATGGGACAGGATTTGCAGAAGGAACAGGCTTAAAAAACATC 756
||||| |||| |||||||||||||||||||||||||||||||||||||| ||||| || |
Sbjct 947 AGAGGGTTTGCTTCAAAGGATGGGACAGGATTTGCAGAAGGAACAGGCTCAAAAAGCACC 1006
Query 757 AAGATACTGTCGAATGCGAGCTTCTTCATGATGACCAGAAGATGGTTCATTCCATCAGAG 816
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1007 AAGATACTGTCGAATGCGAGCTTCTTCATGATGACCAGAAGATGGTTCATTCCATCCGAG 1066
Query 817 TCCATGTCTTGCGTAGA-ACTGATTGATCCTCTTACCAC-CACCA 859
||||||||||||||||| | || |||||||||| |||| |||||
Sbjct 1067 TCCATGTCTTGCGTAGAGA-TGCTTGATCCTCTCACCATTCACCA 1110
Score = 536 bits (290), Expect = 1e-151
Identities = 399/451 (88%), Gaps = 10/451 (2%)
Strand=Plus/Plus
Query 6 TTCCAACCTCGTTCCATGGCTGACAATAGCGATTTGTTTCCACGTTTCTTCAAAGTTTTC 65
||||||| || ||||||||||||| ||||||| |||| ||| |||||||||||||| |||
Sbjct 217 TTCCAACATCATTCCATGGCTGACGATAGCGAATTGTATCCTCGTTTCTTCAAAGTGTTC 276
Query 66 CTC-TCTGAAACGGCTTCTGATTCGTTGGTGATTCCGTTGTCTTTCATGG-AGTTTCTTG 123
||| | |||| |||||||||| |||||| ||||||||||| |||| |||| | |||||||
Sbjct 277 CTCGT-TGAATCGGCTTCTGAATCGTTGATGATTCCGTTGCCTTTTATGGCA-TTTCTTG 334
Query 124 CTGATCCATTGCCAAAGACAGTGAAGCTCCAAGGTATTGGAGGAAAGA-TTTGGACTGTG 182
||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||||
Sbjct 335 CTGATCCATTGCCAAAGACAGTGAAGCTCCAAGGTCTTGGAGGAAA-ACTTTGGACTGTG 393
Query 183 AGCTTGGAGAAGATAAGCGGGGCTGTGTATTTTACTACCGGATGGTCAAAATTCGCAAAG 242
|||||| |||| |||||||| |||| |||| |||||| |||||| ||||||||||| ||
Sbjct 394 AGCTTGAAGAAAATAAGCGGAGCTGCGTATCTTACTAGAGGATGGCCAAAATTCGCAGAG 453
Query 243 GACCACGAGCTGAAGAACGGAGAGTTCATGACATTCGTGTATGATGGTCATCGTACCTTT 302
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 454 GAACATGAGCTGAAGAACGGAGAGTTCATGACATTTGTGTATGATGGTCATCGTACCTTT 513
Query 303 GAAGTGAGTGTCTTTGAGCGTTTTGGGTT-CAAAGAGACCAGAGCTGAAATACAAGCCAT 361
||||||||||||||||| |||| |||| ||||||| |||||||||||||||||||||
Sbjct 514 GAAGTGAGTGTCTTTGATCGTTG-GGGTAGCAAAGAGGTCAGAGCTGAAATACAAGCCAT 572
Query 362 TCAACTTTCTGATTCTCATTCTGATTCTGTTGTGGAAGAAGAAGAAGATTCATCTGATGT 421
| ||||||||||||| |||||||||||||||||||||| ||| |||| ||| |||||||
Sbjct 573 ACCACTTTCTGATTCTGATTCTGATTCTGTTGTGGAAGACGAAAAAGACTCAACTGATGT 632
Query 422 TGATGATGGTAGCTG-TGGTGAAGATGAAGA 451
|| ||| | | | || || ||||||||||||
Sbjct 633 TGTTGAAGAT-GATGATGATGAAGATGAAGA 662
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42096215186
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5