BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938233
Length=1376
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53330.1 | Symbols: | plastocyanin-like domain-containing p... 688 0.0
> AT3G53330.1 | Symbols: | plastocyanin-like domain-containing
protein | chr3:19772930-19773938 FORWARD LENGTH=933
Length=933
Score = 688 bits (372), Expect = 0.0
Identities = 511/575 (89%), Gaps = 22/575 (4%)
Strand=Plus/Plus
Query 767 caccaccaccaccaAGCAAGATCCATGAACCCTCAC-ATCCGA-T--TCCTTCTCCACCA 822
||||||||||||||||||||| |||||||| |||| | || | | |||||| ||||||
Sbjct 365 CACCACCACCACCAAGCAAGACCCATGAACGGTCACGA-CCCATTACTCCTTCACCACCA 423
Query 823 CCACCGAGCAAGATCCATGAACCCTCACGTCCG-AT--TACTCCACCACCACCACCA--- 876
||||| ||||||| ||||||||| ||||||||| || | |||||||||||||||||
Sbjct 424 CCACCAAGCAAGACCCATGAACCGTCACGTCCGAATACTCCTCCACCACCACCACCACCG 483
Query 877 AGCAAGATCCATGAACCCTCACGTCCG-ATTCCTCCACCACTATCACCACCGAGCAAAG- 934
||||||| |||||||||||||||| || ||| |||| ||| | ||||||||||| |||
Sbjct 484 AGCAAGACCCATGAACCCTCACGT-CGCATTACTCCTTCACCACCACCACCGAGC-AAGA 541
Query 935 TCCTTCCTTTGGGTAAGATCTACAAG-GTTGGTGACTCCAGAGGATGGAGCGTTTATAAC 993
|||||||||| |||||||||||| || |||||||||| | ||||||||||||||||| ||
Sbjct 542 TCCTTCCTTTTGGTAAGATCTAC-AGAGTTGGTGACTACGGAGGATGGAGCGTTTATTAC 600
Query 994 AGTTACTACTATTACAGGTGGAGTGAGGGAAAACAGTTTCATGTTGGAGATACTCTCTAT 1053
|||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |
Sbjct 601 AGTTACTACTATTACAAGTGGAGTGAGGGTAAACAGTTTCATGTTGAAGATACTCTCTTT 660
Query 1054 TTCGAATATAACAAGTACCTCAACGACGTTAGGGAAATCAGCGATGATCTTGAGTTCAAA 1113
||| |||| |||||| | |||||||||||||||||||||| |||||| |||||||||| |
Sbjct 661 TTCCAATACAACAAGGAACTCAACGACGTTAGGGAAATCACCGATGAACTTGAGTTCAGA 720
Query 1114 TCCTGCGAA-CAAAATTCTACAGTAGCTGTGTACAAAACGGGACACGATCTCATTAAGCT 1172
|| |||||| | | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTTGCGAATC-GACTTCTACTGTAGCTGTGTACAAAACGGGACACGATCTCATTAAGCT 779
Query 1173 TACCAAACCAGGAGTGCATTATTTTGTAAGCTTAAAAACCGGTCTTTGTCAGGCTGGCAT 1232
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 780 CACTAAACCAGGAGTGCATTATTTTGTAAGCTTAAAGACCGGTCTTTGTCAGGCTGGGAT 839
Query 1233 TAAGCTTCGAGTCATGGTGCAACCATTAACCGAAGCTGTTACTTTATTCCCGAATGTTCC 1292
|||||||||||||| ||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 840 TAAGCTTCGAGTCACGGTGCAACCATCAACCGAAGCTGTTACTTT---CCCGAATGTTCC 896
Query 1293 CAAGAAGAAGTTGTCACCTATCGTCAACAGGTGGT 1327
|||||||||||||||||||| ||||||||| ||||
Sbjct 897 CAAGAAGAAGTTGTCACCTACCGTCAACAGATGGT 931
Score = 329 bits (178), Expect = 4e-89
Identities = 242/273 (89%), Gaps = 4/273 (1%)
Strand=Plus/Plus
Query 28 ATGATCACAAAGAAGATCTTTGGCTTTGTGCTCGCGATCACGATTCTCTTGGGTTGCTGC 87
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 ATGATCACAAAGAAGATCTTTGGCTTTGTGCTCGCGATCACGATTCTCTTGAGTTGCTGC 60
Query 88 TCGGCTAAAATATACAAAGTTGGAGGTTCTA-ATGGATGGACTGCGAAGAAGAACTCTTG 146
||||| ||||| ||||||||||||||||||| | || |||| || ||||| |||||||||
Sbjct 61 TCGGCGAAAATCTACAAAGTTGGAGGTTCTAGAGGG-TGGAGTGGGAAGACGAACTCTTG 119
Query 147 GGCT-ACGCATAAAGAATTCTATGTCGGAGATTCTTTGGTTTTTGAATACGATCAAAACG 205
|||| | || ||| |||||| | ||||| ||||||||| | || ||||| |||| ||||
Sbjct 120 GGCTGA-GCGTAAGGAATTCCACGTCGGGGATTCTTTGATCTTCCAATACCATCAGAACG 178
Query 206 TTAACGACGTCACTCAAGTCTCTGATGCTTCAAAGTACGAGTCATGCGACTCTTCTTCTC 265
||||||||||||||||| |||| ||||||| |||||||||||||||| |||| |||||||
Sbjct 179 TTAACGACGTCACTCAACTCTCCGATGCTTTAAAGTACGAGTCATGCAACTCCTCTTCTC 238
Query 266 CTAAAGCGGTTTACAACACCGGACACGATGTCA 298
||||||| |||||||| || ||||| |||||||
Sbjct 239 CTAAAGCCGTTTACAATACAGGACATGATGTCA 271
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67770735750
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5