BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938234
Length=575
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53340.1 | Symbols: NF-YB10 | nuclear factor Y, subunit B10 ... 948 0.0
AT2G37060.1 | Symbols: NF-YB8 | nuclear factor Y, subunit B8 | ... 501 3e-141
> AT3G53340.1 | Symbols: NF-YB10 | nuclear factor Y, subunit B10
| chr3:19774331-19776205 REVERSE LENGTH=1001
Length=1001
Score = 948 bits (513), Expect = 0.0
Identities = 549/566 (97%), Gaps = 3/566 (1%)
Strand=Plus/Plus
Query 10 AGGGTTTCTGAGATGGCCGAATCGCAAACCGGAggtggtggtggtggtggAAGCCATGAG 69
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 123 AGGGTTTCTGAGATGGCCGAATCGCAAACC---GGTGGTGGTGGTGGTGGAAGCCATGAG 179
Query 70 AGTGGCGGAGATCAGAGCCCGAGGTCGTTGAATGTTCGTGAGCAGGATAGGTTTCTTCCG 129
|||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 180 AGTGGCGGTGATCAGAGCCCGAGGTCTTTGAATGTTCGTGAGCAGGACAGGTTTCTTCCG 239
Query 130 ATTGCTAACATAAGCCGTATCATGAAGAGAGGTTTACCTCTTAATGGCAAAATTGCTAAA 189
||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 240 ATTGCTAACATAAGCCGTATCATGAAGAGAGGTTTACCTCTAAATGGCAAAATCGCTAAA 299
Query 190 GATGCTAAAGAGACTATGCAGGAATGTGTCTCTGAATTCATCAGCTTCGTCACCAGCGAG 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 GATGCTAAAGAGACTATGCAGGAATGTGTCTCTGAATTCATCAGCTTCGTCACCAGCGAG 359
Query 250 GCTAGTGATAAGTGCCAGAGAGAGAAAAGGAAGACCATCAATGGAGATGATTTGCTTTGG 309
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 GCTAGTGATAAGTGCCAAAGAGAGAAAAGGAAGACCATCAATGGAGATGATTTGCTTTGG 419
Query 310 GCTATGGCCACTCTAGGATTCGAAGAGTACATCGATCCCCTCAAGGTTTACCTGATGCGA 369
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 420 GCTATGGCCACTTTAGGATTCGAAGATTACATCGATCCCCTCAAGGTTTACCTGATGCGA 479
Query 370 TATAGAGAGATGGAGGGTGACACTAAAGGATCAGGAAAAGGCGGGGAATCAAGTGCAAAG 429
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 TATAGAGAGATGGAGGGTGACACTAAAGGATCAGGAAAAGGCGGGGAATCGAGTGCAAAG 539
Query 430 AGAGATGGTCAACCAAACCAAGTGTCTCAGTTCTCGCAGGTTCCTCAACAGGGCTCATTC 489
|||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 540 AGAGATGGTCAACCAAGCCAAGTGTCTCAGTTCTCGCAGGTTCCTCAACAAGGCTCATTC 599
Query 490 TCACAGGGTCCTTATGGAAACCCTCAAGCTTCGAATATGATGGTTCAAATGCCGGGCACA 549
||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 600 TCACAGGGTCCTTATGGAAACTCTCAAGGTTCGAATATGATGGTTCAAATGCCGGGCACA 659
Query 550 GAGTAGTACTAGGGCACTATTCATCA 575
||||||||||||| ||||||||||||
Sbjct 660 GAGTAGTACTAGGACACTATTCATCA 685
> AT2G37060.1 | Symbols: NF-YB8 | nuclear factor Y, subunit B8
| chr2:15576063-15577877 FORWARD LENGTH=841
Length=841
Score = 501 bits (271), Expect = 3e-141
Identities = 438/513 (85%), Gaps = 34/513 (7%)
Strand=Plus/Plus
Query 56 gtggAAGCCATGAGAGTGGCGGAGATCAGAG-CCCGAGGTCGTTGA-ATGTTCGTGAGCA 113
||||||||||||||||||| |||||||| || ||| |||||||| | |||||||||||||
Sbjct 137 GTGGAAGCCATGAGAGTGGTGGAGATCAAAGTCCC-AGGTCGTT-ACATGTTCGTGAGCA 194
Query 114 GGATAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAGAGAGGT-TTACCT-CTT 171
||||||||||||||||||||||||||||||||||||||||| |||||| || ||| ||
Sbjct 195 AGATAGGTTTCTTCCGATTGCTAACATAAGCCGTATCATGAAAAGAGGTCTT-CCTGCT- 252
Query 172 AATGGCAAAATTGCTAAAGATGCTAAAGAGACTATGCAGGAATGTGTCTCTGAATTCATC 231
||||| ||||| |||||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 253 AATGGGAAAATCGCTAAAGATGCTAAGGAGATTGTGCAGGAATGTGTCTCTGAATTCATC 312
Query 232 AGCTTCGTCACCAGCGAGGCTAGTGATAAGTGCCAGAGAGAGAAAAGGAAGACCATCAAT 291
|| |||||||||||||| || |||||||| || || ||||||||||||||||| || |||
Sbjct 313 AGTTTCGTCACCAGCGAAGCGAGTGATAAATGTCAAAGAGAGAAAAGGAAGACTATTAAT 372
Query 292 GGAGATGATTTGCTTTGGGCTATGGCCACTCTAGGATTCGAAGAGTACATCGATCCCCTC 351
|||||||||||||||||||| ||||| ||| ||||||| ||||| ||||| || || |||
Sbjct 373 GGAGATGATTTGCTTTGGGCAATGGCTACTTTAGGATTTGAAGACTACATGGAACCTCTC 432
Query 352 AAGGTTTACCTGATGCGATATAGAGAGATGGAGGGTGACACTAAAGG-ATCAGGAAAAGG 410
||||||||||||||| ||||||||||||||||||||||||| ||||| ||||| ||||||
Sbjct 433 AAGGTTTACCTGATGAGATATAGAGAGATGGAGGGTGACAC-AAAGGGATCAGCAAAAGG 491
Query 411 CGGGGAATC-AAGTGCAAAGAGAGATGGTCAACCAAACCAAG-TGTCTCAGTTCTCGCAG 468
||||| || || |||||||| |||||| ||| ||| |||| || | ||||||||||||
Sbjct 492 TGGGGA-TCCAAATGCAAAGAAAGATGGGCAATCAAGCCAAAATGGC-CAGTTCTCGCAG 549
Query 469 GTTCCTCAACAGGGCTCATTCTCACAGGGTCCTTATGGAAACCCTCAAGCTTC-G-A--A 524
|| | |||| | || ||| ||||||||| ||| |||||||| | | | |
Sbjct 550 CTT--------G--CTCA--C-CA-AGG-TCCTTATGGGAACTCTCAAGCT-CAGCAGCA 593
Query 525 TATGATGGTTCAAATGCCGGGCACAGAGTAGTA 557
||||||||||| ||||||||| ||||| |||||
Sbjct 594 TATGATGGTTCCAATGCCGGGAACAGACTAGTA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27628780850
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5