BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938238
Length=1717
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53390.1 | Symbols: | Transducin/WD40 repeat-like superfami... 2839 0.0
AT2G37160.2 | Symbols: | Transducin/WD40 repeat-like superfami... 1382 0.0
> AT3G53390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:19792531-19796753 FORWARD LENGTH=2252
Length=2252
Score = 2839 bits (1537), Expect = 0.0
Identities = 1654/1712 (97%), Gaps = 1/1712 (0%)
Strand=Plus/Plus
Query 5 TAGCAAAGCAAACACTATGATGAACACTTCTAATGGAATGATATCGGCACCATCTTCATC 64
|||| |||||||||||||||||||||||||||||||||||||||| || |||||||| ||
Sbjct 236 TAGC-AAGCAAACACTATGATGAACACTTCTAATGGAATGATATCAGCGCCATCTTCGTC 294
Query 65 GTCTTCACCGGCGGCGAATCCTCAGTCGCCGGGAATTAAGACTTATTTCAAGACGCCTGA 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 GTCTTCACCGGCGGCGAATCCTCAGTCGCCGGGAATTAAGACTTATTTCAAGACGCCTGA 354
Query 125 AGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCACTATGCACA 184
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||
Sbjct 355 AGGGAAGTATAAGCTTCACTACGAGAAAACGCATTCCTCTGGTCTCCTTCATTACGCACA 414
Query 185 TGGCAAAACGGTTACTCAGGTAACTCTAGCTCAGCTTAAGGAAAGAGCTGCTCCTTCTAC 244
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 415 TGGCAAAACTGTTACTCAGGTAACTATAGCTCAGCTTAAGGAAAGAGCTGCTCCTTCGAC 474
Query 245 TCCAACTGGTACTTCGTCGGGTTACAGTGCTAGTAGCGGGTTTCGCTCAGCAACAGCCAG 304
|||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||
Sbjct 475 TCCAACTGGTACTTCGTCGGGTTATAGTGCTAGTAGCGGGTTTCGTTCAGCAACAGCGAG 534
Query 305 GTTGCTAGGCACTGGAAATGGTAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGGGG 364
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 535 GTTGCTAGGAACTGGAAATGGGAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGCGG 594
Query 365 CAAAAGTGTGAGTACAAGTTCAAGAATTAGTGGCTCCTTTGCTCCTTCTAATTCTAGCAC 424
|||||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||
Sbjct 595 TAAAAGTGTGAGTACAAGTTCAAGAATTAGTGGCTCCTTCGCTGCTTCTAATTCTAATAC 654
Query 425 ATCAATGACAAATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGA 484
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 655 TTCGATGACAAATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGTGAGTGA 714
Query 485 TGCTATTTTTATCTGTGACTTGAACTCACAAGACAAGGATCCAGTAAAGTCTATCCATTT 544
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 715 TGCTATTTTTATCTGTGACTTGAACTCACAAGAAAAGGATCCAGTAAAGTCTATCCATTT 774
Query 545 CAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTT 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 CAGTAATTCAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGACTT 834
Query 605 ACTTATTGGGCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAATTACAGGA 664
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 835 ACTTATTGGGCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAGTTACAGGA 894
Query 665 CGTCTCTAAGAAGCTAGTTGGTGCACTGCATTATAACAAGGACGGTTCTGTGAATAACAG 724
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 895 CGTCTCTAAGAAGCTAGTTGGTGCTCTGCATTATAACAAGGACGGTTCTGTGAATAACAG 954
Query 725 TCGTTGTACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGC 784
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 TCGTTGCACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGC 1014
Query 785 CGATGGCAATTTGTACGTGTATGAGAAGAACAAAGATGGTGCCACTGAGTCAACATTTCC 844
||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1015 CGATGGCAATTTGTATGTGTATGAGAAGAACAAAGATGGTGCCACTGAATCAACATTTCC 1074
Query 845 TGCTATAAGAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCC 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1075 TGCTATAAGAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCC 1134
Query 905 TGTTGCGAGATGGCATATATGTCAAGGTTCAGTTAACAGCATTGCATTCTCAAATGATGG 964
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1135 TGTTGCGAGATGGCATATATGTCAAGGTTCAATTAACAGCATTGCATTCTCAAATGATGG 1194
Query 965 GGCACACTTGGCGACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTTAACCCA 1024
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1195 GGCACACTTGGCAACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTTAACCCA 1254
Query 1025 GAAGCTAGTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTAT 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1255 GAAGCTAGTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTAT 1314
Query 1085 GGATGGAAAGTACATTTTGACTGGAGGTGAAGATGACCTAGTTCAAGTGTGGAGTATGGA 1144
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1315 GGATGGAAAGTACATTTTGACTGGAGGTGAAGATGATTTAGTTCAAGTGTGGAGTATGGA 1374
Query 1145 TGATCGGAAGGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGCGGAGTAGCGTT 1204
|||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1375 GGATCGGAAAGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGTGGAGTAGCGTT 1434
Query 1205 TGATTCCTATTGGTCGTCACCAAATTCAGATGGGTCAGGAGAGCATGTCATGTACCGTTT 1264
||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1435 TGATTCCAATTGGTCGTCACCAAACTCGGATGGGTCAGGAGAGCATGTCATGTACCGTTT 1494
Query 1265 CGGATCAGTTGGACAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGT 1324
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1495 TGGATCAGTTGGTCAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGT 1554
Query 1325 AGTTCCACTTAGGCGAGCTCCAGGTGGGTCTCCAACTTACAGCACAGGAAGCTCAGCTCA 1384
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 1555 AGTTCCACTTAGGCGAGCTCCAGGAGGATCTCCAACTTACAGCACAGGAAGCTCAGCTCA 1614
Query 1385 CTGGGACAATGTCATACCAATGGGAACTCTTCAACCCGCTCCTTGCAAACGAGATGTTCC 1444
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1615 CTGGGACAATGTCATACCAATGGGAACTCTTCAACCGGCTCCTTGCAAACGCGATGTTCC 1674
Query 1445 AAAGCTCTCACCGATCATAGCTCACCGAGTTCACACTGAGCCCCTCTCTGGATTGATGTT 1504
|||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1675 AAAGCTGTCACCGATCATAGCACACCGAGTTCACACAGAGCCCCTCTCTGGCTTGATGTT 1734
Query 1505 CACACAAGAATCAGTCGTTACGGCTTGCCGAGAAGGCCATATAAAGATCTGGACACGGCC 1564
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1735 CACACAAGAATCAGTCGTTACGGCTTGTCGAGAAGGCCATATAAAGATCTGGACACGGCC 1794
Query 1565 CAGCGAATCAGAAACCCAATCCAACAGCTCAGAAGCAAATCCTACAAGTGCCCTCTTGAG 1624
||| ||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 1795 CAGTGAATCAGAAACCCAAACTAACAGCTCAGAAGCAAATCCTACAACTGCCCTCTTGAG 1854
Query 1625 CACAAGCTTCACAAAAGACAACAAAGCCTCACTGAGCAGCAAGATCATCGGTGGTTCTAC 1684
|||||||||||| |||||||||||||| ||||||||||||||||||||| |||| |||||
Sbjct 1855 CACAAGCTTCACGAAAGACAACAAAGCTTCACTGAGCAGCAAGATCATCAGTGGCTCTAC 1914
Query 1685 TTTCAAGCAATGACGGAGAGATGCTACTTGTC 1716
|||||||||||||| |||||||||||||||||
Sbjct 1915 TTTCAAGCAATGACAGAGAGATGCTACTTGTC 1946
> AT2G37160.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:15608828-15612934 FORWARD LENGTH=2346
Length=2346
Score = 1382 bits (748), Expect = 0.0
Identities = 1177/1382 (85%), Gaps = 37/1382 (3%)
Strand=Plus/Plus
Query 200 TCAGGTAACTCTAGCTCAGCTTAAGGA-AAGAGCTGCTCCTTCTACTCCAACTGGTACTT 258
|||||| ||||||||||| |||||||| || | ||||||| || || |||||||| || |
Sbjct 486 TCAGGTTACTCTAGCTCACCTTAAGGATAA-ACCTGCTCCATCGACACCAACTGGGACCT 544
Query 259 CGTCGGGTTACAGTGCTAGTAGCGGGTTT-CGCTCAGCAACAGCCAGGTTGCTAGGCACT 317
|||| ||| || ||||||||| ||||| || ||||||||||| ||||| | || |
Sbjct 545 CGTCAAGTTCCACAGCTAGTAGC-GGTTTCCGGTCAGCAACAGCAAGGTTATTGGGTGGT 603
Query 318 GGAAATGGTAGCCGTGCGCTTAGTTTTGTTGGAGGTAATGGTGGGGGC-AAAAGTGTGAG 376
|| ||||||| |||||||||||||||||||||||||||||| |||| | |||| |||| |
Sbjct 604 GGGAATGGTAACCGTGCGCTTAGTTTTGTTGGAGGTAATGGAGGGG-CTAAAAATGTGGG 662
Query 377 TACAAGTTCAAGAATTAGTGGC-TCCTTTGCTCCTTCTAATTCTAGCACATCAA-TGACA 434
| |||||||||| ||| | ||| || || ||| |||||| ||||| || ||| | ||
Sbjct 663 TGCAAGTTCAAGGATTGG-GGCCTCATTCGCTGCTTCTAGTTCTAATACCTCAGCT-ACT 720
Query 435 AATACGAATTTTGATGGGAAAGGAACTTACTTGGTCTTCAATGT-GAGTGATGCTATTTT 493
||||| ||||| |||||||||||||||||||| ||||||||||| | |||||||||||||
Sbjct 721 AATACAAATTTCGATGGGAAAGGAACTTACTTAGTCTTCAATGTTG-GTGATGCTATTTT 779
Query 494 TATCT-GTGACTTGAACTCACAAGACAAGGATCCAGTAAAGTCTATCCATTTCAGTAATT 552
||| | ||||||||||||| || ||||||||||||||||||||||| ||| |||| ||||
Sbjct 780 TAT-TAGTGACTTGAACTCGCAGGACAAGGATCCAGTAAAGTCTATACATATCAGCAATT 838
Query 553 CAAACCCTATGTGTCATGCTTTTGATCCGGATGCTAAGGATGGGCATGA-CTTACTTATT 611
||||||||||||| ||||| ||| |||| |||||||||||||| ||||| || |||||||
Sbjct 839 CAAACCCTATGTGCCATGCATTTCATCCAGATGCTAAGGATGGACATGATCT-ACTTATT 897
Query 612 GGGCTGAATTCTGGGGATGTGTACACAGTATCACTGAGACAGCAATTACAGGACGTCTC- 670
|||||||| ||||||||||| ||||| |||||||| |||||||| || ||||| || |
Sbjct 898 GGGCTGAACTCTGGGGATGTCTACACCGTATCACTAAGACAGCAGTTGCAGGATGT-TGG 956
Query 671 TAAGAAGCTAGTTGGTGCACTGCATTATAACAAGGACGGTTCTGTGAATAACAGTCGTTG 730
||||||||| ||| |||| | |||||||||||| || |||||||| |||||||| || ||
Sbjct 957 TAAGAAGCTTGTTAGTGCTCAGCATTATAACAAAGATGGTTCTGTAAATAACAGCCGCTG 1016
Query 731 TACTAGTATTTCTTGGGTGCCTGGAGGTGATGGAGCATTTGTCGTTGCTCATGCCGATGG 790
||||||||| ||||||||||||||||||||||| | ||||| | |||||||||||||||
Sbjct 1017 TACTAGTATAGCTTGGGTGCCTGGAGGTGATGGATCCTTTGTTGCTGCTCATGCCGATGG 1076
Query 791 CAATTTGTACGTGTATGAGAAGAACAAAGATGGTGCCACTGAGTCAACATTTCCTGCTAT 850
||| ||||||| ||||| ||||| ||||| ||||| ||||| || ||||| |||||||
Sbjct 1077 AAATCTGTACGTATATGAAAAGAATAAAGAAGGTGCAACTGATTCTTCATTTTCTGCTAT 1136
Query 851 AAGAGATCCTACACAATTTTCAGTTGACAAGGCAAAATATAGCAAGAGTAATCCTGTTGC 910
||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| || ||
Sbjct 1137 AAGGGATCCTACACAGTTTTCAGTTGACAAAGCAAAATATAGCAAGAGTAATCCAGTAGC 1196
Query 911 GAGATGGCATATATGT-CAAGGTTC-AGTTAACAGCATTGCATTCTCAAATGATGGGGCA 968
|||||||||||| || |||||| | | |||| ||||||||||| ||||||||||| ||
Sbjct 1197 GAGATGGCATAT-TGGGCAAGGTGCGA-TTAATAGCATTGCATTTTCAAATGATGGAGCG 1254
Query 969 CACTTGGCGACTGTTGGAAGAGATGGCTATCTTCGCATTTTTGACTTCTT-AACCCAGAA 1027
||||||| ||||||||||||||||| |||||||| |||||||| || || |||||| ||
Sbjct 1255 TACTTGGCAACTGTTGGAAGAGATGGTTATCTTCGAATTTTTGATTT-TTCAACCCAAAA 1313
Query 1028 GCTAGTATGTGGTGGAAAAAGTTATTATGGTGCTCTGCTGTGCTGTTCTTGGAGTATGGA 1087
|||||| ||||||| ||||||||||||||||||||| |||| ||| |||||||||||||
Sbjct 1314 GCTAGTGTGTGGTGTAAAAAGTTATTATGGTGCTCTATTGTGTTGTGCTTGGAGTATGGA 1373
Query 1088 TGGAAAGTACATTTTGACTGGAGGTGAAGATGACCTAGTTCAAGTGTGGAGTATGGATGA 1147
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||| ||
Sbjct 1374 TGGAAAGTACCTTTTGACTGGAGGTGAAGATGACTTGGTTCAAGTGTGGAGTATGGAAGA 1433
Query 1148 TCGGAAGGTTGTGGCGTGGGGTGAGGGACATAATTCGTGGGTAAGCGGAGTAGCGTTTGA 1207
||| ||||||||||| |||||||||||||| |||||||||||||| || || ||||||||
Sbjct 1434 TCGAAAGGTTGTGGCATGGGGTGAGGGACACAATTCGTGGGTAAGTGGTGTGGCGTTTGA 1493
Query 1208 TTCCTATTGGTCGTCACCAAATTCAGATGGGTCAGGAGAGCATGTCATGTACCG-TTTCG 1266
||| ||||||||||||||||||||||| ||||| || ||| |||||||||| || ||| |
Sbjct 1494 TTCGTATTGGTCGTCACCAAATTCAGAGGGGTCTGGCGAGAATGTCATGTATCGGTTT-G 1552
Query 1267 GATCAGTTGGACAGGACACACAGTTACTTCTCTGGGACCTTGAGATGGACGAGATCGTAG 1326
| || ||||| ||||||||||||||||| || |||||||| || ||||| ||||| || |
Sbjct 1553 GTTCTGTTGGTCAGGACACACAGTTACTGCTATGGGACCTAGAAATGGATGAGATTGTTG 1612
Query 1327 TTCCACTTA-GGCGAGCTCCAGGTGGGTCTCCAACTTACAGCACAGGAAG-C--TCAGCT 1382
|||| || | ||||| ||||||| || || || |||||||||||||| || | || |||
Sbjct 1613 TTCCCCT-ACGGCGACCTCCAGGAGGATCACCCACTTACAGCACAGGGAGTCAGTCCGCT 1671
Query 1383 CACTGGGACAATGTCATACCAATGGGAACTCTTCAACCCGCTCCTTGCAAACGAGATGTT 1442
||||||||||| | | |||||||| |||||||| || || || |||| || |||||
Sbjct 1672 CACTGGGACAACATTGTTCCAATGGGCACTCTTCAGCCAGCGCCGTGCATGCGCGATGTC 1731
Query 1443 CCAAAGCTCTCACC-GATCA-TAGCTCACCGAGTTCACACTGAGCCCCTCTCTGGATTGA 1500
|||||||||||||| | | | | |||||||| |||||||| ||||||||||| || ||||
Sbjct 1732 CCAAAGCTCTCACCAG-T-AGTGGCTCACCGTGTTCACACCGAGCCCCTCTCGGGCTTGA 1789
Query 1501 TGTTCACACAAGAATCAGTCGTTA-CGGCTTGCCGAGAAGGCCATATAAAGATCTGGACA 1559
| ||||| ||||||||| | | || | |||||| ||||||||||| ||||||||||||||
Sbjct 1790 TCTTCACCCAAGAATCATT-GATAACAGCTTGCAGAGAAGGCCATTTAAAGATCTGGACA 1848
Query 1560 CG 1561
||
Sbjct 1849 CG 1850
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84889121595
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5