BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938240
Length=1438
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53402.1 | Symbols: CPuORF46 | conserved peptide upstream op... 2143 0.0
AT3G53400.1 | Symbols: | BEST Arabidopsis thaliana protein mat... 2143 0.0
> AT3G53402.1 | Symbols: CPuORF46 | conserved peptide upstream
open reading frame 46 | chr3:19798107-19800136 FORWARD LENGTH=2030
Length=2030
Score = 2143 bits (1160), Expect = 0.0
Identities = 1327/1408 (94%), Gaps = 9/1408 (1%)
Strand=Plus/Plus
Query 20 TATGGGCGTTGAGATGTTGAAACTGAAACTGATGCCTAGCTCATTCCGTCGGCGCGTGAT 79
||||||| ||||| ||||||| |||||| |||||||||| ||||||||||||||||| ||
Sbjct 419 TATGGGCTTTGAGGTGTTGAAGCTGAAATTGATGCCTAGTTCATTCCGTCGGCGCGTCAT 478
Query 80 CTTACGCGCCCTCGTGATCGTTTGCGCTTTCTCTGTTGTATCTGTTTTGCGAAACCTCGG 139
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 CTTACGCGCCCTCGTGATCGTCTGCGCTTTCTCTGTTGTATCTGTTTTGCGAAACCTCGC 538
Query 140 CGGAGCTTATGAAGGAGAGAATAGTAATAACACTCAGCCATGTAAGGTTGATGAATGCGC 199
||||||||| |||||||||| || |||||| |||||||| ||||||||||||||||||||
Sbjct 539 CGGAGCTTACGAAGGAGAGACTATTAATAATACTCAGCCGTGTAAGGTTGATGAATGCGC 598
Query 200 CGTGAATTTCGCGTTTCTGGGTCCGTTCCTCTTCTCAGGCAACGGA---TTATTATCCAA 256
|||||||||||||||||| |||||||| || |||||||| |||||| || || |||||
Sbjct 599 CGTGAATTTCGCGTTTCTAGGTCCGTTTCTTTTCTCAGGTAACGGATTGTTGTTCTCCAA 658
Query 257 CAGGTTCTTGAAACCTGTTTTGAACTATTTGGAGTCGGAGAAATGTAAGGAAAACATTTA 316
|| |||||||||||||||| |||||||||||| || || ||||||||||| ||||||||
Sbjct 659 TAGATTCTTGAAACCTGTTTGGAACTATTTGGAATCTGACAAATGTAAGGACAACATTTA 718
Query 317 TTTGACTACTGAAGTTGTCAGAGAGCTTACTGGTATGAATCTGCTGAGTAATGATTCGAA 376
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 TTTGACTACTCAAGTTGTCAGAGAGCTTACTGGTATGAATCTGCTGAGTAATGATTCAAA 778
Query 377 TGCTCTCTGTATTGGTCGGAGATCGGTTTCAGCTGTTCTTGCAATGAATCGACAAGGGAT 436
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 AGCTCTCTGTATTGGTCGGAGATCGGTTTCAGCTGTTCTTGCGATGAATCGACAAGGGAT 838
Query 437 CTCTGATGTTAGTGTGGCTTATATGCCACCGGTTTTCGCTTTCAAGCATAGGAAGTTCAC 496
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 CTCTGATGTTAGTGTGGCTTATATGCCACCTGTTTTCGCTTTCAAGCATAGGAAGTTCAC 898
Query 497 AAGTGAGCTACATTATGAGGATGCTTCTTTTGGCTTTGTGTTTTCTATGGATCTTGAGAC 556
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 899 AAGTGAGCTACATTATGAGGATGCTTCTTTTGGTTTTGTGTTTTCTATGGATCTTGAGTC 958
Query 557 AGTTGCTGTCCCTGCTTCACTTGTTTATGAGATTGAGCGTATACTTAAGCCTGGTGGAAC 616
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 959 AGTTGCTGTCCCTGCTTCACTTGTTTATGAGATCGAGCGTATACTTAAGCCCGGTGGAAC 1018
Query 617 CGGGGCTATGCTTGTGGGTACTATTAGTGGGTCTGACTCTAACGAGTTGGTCAGATCGGT 676
|||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 1019 TGGGGCTATGCTTGTCGGTACTACTAGTGGGTCTGACTCTAACGAGTTGGTTAGATCCGT 1078
Query 677 TTCGCCTGTTTCTTCATTGCTGAAGAACTCGAGTGTGGTTCATGTTGCTTCCTTGGGTGA 736
|||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
Sbjct 1079 TTCGCCTGTTTCTTCATTGCTGAAGAACTCAAGTGTTGTTCATGTTGCTTCATTGGGTAA 1138
Query 737 ACAGGTTTTGGTTGTGTTCAAGAA-AGATGGAGAAGATAGTTTCCGCTTGGATCAAACTC 795
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1139 ACAGGTTTTGGTTGTATTCAA-AAGAGATGGAGAAGATAGTTTCCGCTTGGATCAAACTC 1197
Query 796 ATCATGACCTTCCGGCTGATTGCTCGTCCGTTCTCAACAACCTACCATACATTGGATTAT 855
|||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1198 ATCATGACTTTCCTGCTGATTGCTCGTCTGTTCTCAACAACCGGCCATACATTGGATTAT 1257
Query 856 TGGAGCCTCTTCTGGAGGAAAAACGTTCGGATTTCGAGAGACGGATTCATTACTTGCCCG 915
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1258 TGGAGCCTCTTCTGGATGAAAAACGTTCGGATTTCGAGAGACGGATTCATTACTTGCCTG 1317
Query 916 AGTTCATTGATCTCTCTTCTCGGAAGCGGCTGGTTTATATTGATATCGGGGCAGCGGATC 975
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct 1318 AGTTCATTGATCTCTCTTCTAGGAAGAGGCTGGTTTATATTGATATCGGGGCAGTGGATC 1377
Query 976 ATGTGAAAGCGAGGTCGAACTGGTTCTTCCCATCGTACCCAATCGACAGGAAAGCTTTTA 1035
|||||||||| || |||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1378 ATGTGAAAGCAAGATCGAACTGGTTCTTCCCATCGTACCCGATTGATAGGAAAGCTTTTA 1437
Query 1036 ATAGCTACTTTGTGCATCACAACACATCTATCTTGACTTCTTATGTCAAAAGCCCTGGCG 1095
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1438 ATAGCTACTTTGTGCATCACAACACATCTATCTTGACTTCTTATGTCAAAAGCCCTGGTG 1497
Query 1096 TAACCTTCATCTATCATCCAGGACTCGCAGCAACTAAAACTACAATAGCCAGT-CTTGGA 1154
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 1498 TAACCTTCATCTATCATCCAGGACTCGCAGCAACTAAAACTACAATAGCCAATACC-GGA 1556
Query 1155 GATCAAGAAGAACCTTTTGTGGAAGATGATAGCTTTGATTTTCTAGCATGGTTCAAGGAA 1214
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GATCACGAAGAACCTTTTGTGGAAGATGATAGCTTTGATTTTCTAGCATGGTTCAAGGAA 1616
Query 1215 ACAGCGAGCTTCGCTGATTTTGTTGTTCTGAAGATGAACACAAGCAATACTGAGCTGAAG 1274
|| || ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1617 ACTGCTAGCTTCGCTGATTTTGTGGTTCTGAAGATGAACACAAGCGATACTGAGCTGAAG 1676
Query 1275 TTTCTCTCAGAGCTGATAAAGACAGGAG-TGATCTGCTCAGTTGATGAACTGTTTCTTCA 1333
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1677 TTTCTCTCAGAGCTGATAAAGACAGGAGCT-ATCTGCTCAGTTGATGAACTGTTTCTTCA 1735
Query 1334 CTGCACAGGCTACAGAGACTGCACTGGTATCTTTAAAAGCCTCAGAAACAGTGGCGTCTT 1393
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1736 CTGCACAGGCTACAGCGACTGCACCGGTATCATTAAAAGCCTCAGAAACAGTGGCGTCTT 1795
Query 1394 TGTCCATCAGTGGTGGGAAGACTAATAA 1421
||||||||| ||||||||||||||||||
Sbjct 1796 TGTCCATCAATGGTGGGAAGACTAATAA 1823
> AT3G53400.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: conserved peptide upstream open reading frame 47 (TAIR:AT5G03190.1);
Has 285 Blast hits to 285 proteins in 23 species:
Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 0; Plants
- 279; Viruses - 0; Other Eukaryotes - 5 (source: NCBI
BLink). | chr3:19798107-19800136 FORWARD LENGTH=2030
Length=2030
Score = 2143 bits (1160), Expect = 0.0
Identities = 1327/1408 (94%), Gaps = 9/1408 (1%)
Strand=Plus/Plus
Query 20 TATGGGCGTTGAGATGTTGAAACTGAAACTGATGCCTAGCTCATTCCGTCGGCGCGTGAT 79
||||||| ||||| ||||||| |||||| |||||||||| ||||||||||||||||| ||
Sbjct 419 TATGGGCTTTGAGGTGTTGAAGCTGAAATTGATGCCTAGTTCATTCCGTCGGCGCGTCAT 478
Query 80 CTTACGCGCCCTCGTGATCGTTTGCGCTTTCTCTGTTGTATCTGTTTTGCGAAACCTCGG 139
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 479 CTTACGCGCCCTCGTGATCGTCTGCGCTTTCTCTGTTGTATCTGTTTTGCGAAACCTCGC 538
Query 140 CGGAGCTTATGAAGGAGAGAATAGTAATAACACTCAGCCATGTAAGGTTGATGAATGCGC 199
||||||||| |||||||||| || |||||| |||||||| ||||||||||||||||||||
Sbjct 539 CGGAGCTTACGAAGGAGAGACTATTAATAATACTCAGCCGTGTAAGGTTGATGAATGCGC 598
Query 200 CGTGAATTTCGCGTTTCTGGGTCCGTTCCTCTTCTCAGGCAACGGA---TTATTATCCAA 256
|||||||||||||||||| |||||||| || |||||||| |||||| || || |||||
Sbjct 599 CGTGAATTTCGCGTTTCTAGGTCCGTTTCTTTTCTCAGGTAACGGATTGTTGTTCTCCAA 658
Query 257 CAGGTTCTTGAAACCTGTTTTGAACTATTTGGAGTCGGAGAAATGTAAGGAAAACATTTA 316
|| |||||||||||||||| |||||||||||| || || ||||||||||| ||||||||
Sbjct 659 TAGATTCTTGAAACCTGTTTGGAACTATTTGGAATCTGACAAATGTAAGGACAACATTTA 718
Query 317 TTTGACTACTGAAGTTGTCAGAGAGCTTACTGGTATGAATCTGCTGAGTAATGATTCGAA 376
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 719 TTTGACTACTCAAGTTGTCAGAGAGCTTACTGGTATGAATCTGCTGAGTAATGATTCAAA 778
Query 377 TGCTCTCTGTATTGGTCGGAGATCGGTTTCAGCTGTTCTTGCAATGAATCGACAAGGGAT 436
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 779 AGCTCTCTGTATTGGTCGGAGATCGGTTTCAGCTGTTCTTGCGATGAATCGACAAGGGAT 838
Query 437 CTCTGATGTTAGTGTGGCTTATATGCCACCGGTTTTCGCTTTCAAGCATAGGAAGTTCAC 496
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 839 CTCTGATGTTAGTGTGGCTTATATGCCACCTGTTTTCGCTTTCAAGCATAGGAAGTTCAC 898
Query 497 AAGTGAGCTACATTATGAGGATGCTTCTTTTGGCTTTGTGTTTTCTATGGATCTTGAGAC 556
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 899 AAGTGAGCTACATTATGAGGATGCTTCTTTTGGTTTTGTGTTTTCTATGGATCTTGAGTC 958
Query 557 AGTTGCTGTCCCTGCTTCACTTGTTTATGAGATTGAGCGTATACTTAAGCCTGGTGGAAC 616
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 959 AGTTGCTGTCCCTGCTTCACTTGTTTATGAGATCGAGCGTATACTTAAGCCCGGTGGAAC 1018
Query 617 CGGGGCTATGCTTGTGGGTACTATTAGTGGGTCTGACTCTAACGAGTTGGTCAGATCGGT 676
|||||||||||||| ||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 1019 TGGGGCTATGCTTGTCGGTACTACTAGTGGGTCTGACTCTAACGAGTTGGTTAGATCCGT 1078
Query 677 TTCGCCTGTTTCTTCATTGCTGAAGAACTCGAGTGTGGTTCATGTTGCTTCCTTGGGTGA 736
|||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||| |
Sbjct 1079 TTCGCCTGTTTCTTCATTGCTGAAGAACTCAAGTGTTGTTCATGTTGCTTCATTGGGTAA 1138
Query 737 ACAGGTTTTGGTTGTGTTCAAGAA-AGATGGAGAAGATAGTTTCCGCTTGGATCAAACTC 795
||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1139 ACAGGTTTTGGTTGTATTCAA-AAGAGATGGAGAAGATAGTTTCCGCTTGGATCAAACTC 1197
Query 796 ATCATGACCTTCCGGCTGATTGCTCGTCCGTTCTCAACAACCTACCATACATTGGATTAT 855
|||||||| |||| |||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1198 ATCATGACTTTCCTGCTGATTGCTCGTCTGTTCTCAACAACCGGCCATACATTGGATTAT 1257
Query 856 TGGAGCCTCTTCTGGAGGAAAAACGTTCGGATTTCGAGAGACGGATTCATTACTTGCCCG 915
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1258 TGGAGCCTCTTCTGGATGAAAAACGTTCGGATTTCGAGAGACGGATTCATTACTTGCCTG 1317
Query 916 AGTTCATTGATCTCTCTTCTCGGAAGCGGCTGGTTTATATTGATATCGGGGCAGCGGATC 975
|||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||
Sbjct 1318 AGTTCATTGATCTCTCTTCTAGGAAGAGGCTGGTTTATATTGATATCGGGGCAGTGGATC 1377
Query 976 ATGTGAAAGCGAGGTCGAACTGGTTCTTCCCATCGTACCCAATCGACAGGAAAGCTTTTA 1035
|||||||||| || |||||||||||||||||||||||||| || || |||||||||||||
Sbjct 1378 ATGTGAAAGCAAGATCGAACTGGTTCTTCCCATCGTACCCGATTGATAGGAAAGCTTTTA 1437
Query 1036 ATAGCTACTTTGTGCATCACAACACATCTATCTTGACTTCTTATGTCAAAAGCCCTGGCG 1095
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1438 ATAGCTACTTTGTGCATCACAACACATCTATCTTGACTTCTTATGTCAAAAGCCCTGGTG 1497
Query 1096 TAACCTTCATCTATCATCCAGGACTCGCAGCAACTAAAACTACAATAGCCAGT-CTTGGA 1154
||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||
Sbjct 1498 TAACCTTCATCTATCATCCAGGACTCGCAGCAACTAAAACTACAATAGCCAATACC-GGA 1556
Query 1155 GATCAAGAAGAACCTTTTGTGGAAGATGATAGCTTTGATTTTCTAGCATGGTTCAAGGAA 1214
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1557 GATCACGAAGAACCTTTTGTGGAAGATGATAGCTTTGATTTTCTAGCATGGTTCAAGGAA 1616
Query 1215 ACAGCGAGCTTCGCTGATTTTGTTGTTCTGAAGATGAACACAAGCAATACTGAGCTGAAG 1274
|| || ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||
Sbjct 1617 ACTGCTAGCTTCGCTGATTTTGTGGTTCTGAAGATGAACACAAGCGATACTGAGCTGAAG 1676
Query 1275 TTTCTCTCAGAGCTGATAAAGACAGGAG-TGATCTGCTCAGTTGATGAACTGTTTCTTCA 1333
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 1677 TTTCTCTCAGAGCTGATAAAGACAGGAGCT-ATCTGCTCAGTTGATGAACTGTTTCTTCA 1735
Query 1334 CTGCACAGGCTACAGAGACTGCACTGGTATCTTTAAAAGCCTCAGAAACAGTGGCGTCTT 1393
||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||
Sbjct 1736 CTGCACAGGCTACAGCGACTGCACCGGTATCATTAAAAGCCTCAGAAACAGTGGCGTCTT 1795
Query 1394 TGTCCATCAGTGGTGGGAAGACTAATAA 1421
||||||||| ||||||||||||||||||
Sbjct 1796 TGTCCATCAATGGTGGGAAGACTAATAA 1823
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 70883169540
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5