BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938244
Length=549
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53430.1 | Symbols: | Ribosomal protein L11 family protein ... 904 0.0
AT2G37190.1 | Symbols: | Ribosomal protein L11 family protein ... 542 2e-153
AT5G60670.1 | Symbols: | Ribosomal protein L11 family protein ... 497 4e-140
> AT3G53430.1 | Symbols: | Ribosomal protein L11 family protein
| chr3:19809687-19810469 REVERSE LENGTH=783
Length=783
Score = 904 bits (489), Expect = 0.0
Identities = 524/541 (97%), Gaps = 1/541 (0%)
Strand=Plus/Plus
Query 4 AGCGAAACTCCAAATCACAGAACCATGCCGCCGAAGTTGGACCCGAGCCAGATCGTCGAT 63
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 51 AGCGAAACTCCAAAACACAGAGCCATGCCGCCGAAGTTGGACCCGAGCCAGATCGTCGAT 110
Query 64 GTGTACGTCCGTGTAACCGGAGGAGAAGTCGGAGCCGCCAGTTCTCTAGCTCCAAAGATC 123
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 111 GTGTACGTCCGTGTAACCGGAGGAGAAGTGGGAGCCGCCAGTTCTCTAGCTCCAAAGATC 170
Query 124 GGTCCACTCGGTCTCGCACCAAAGAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAA 183
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 GGTCCTCTCGGTCTCGCACCAAAGAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAA 230
Query 184 GAATGGAAAGGACTTCGTGTCACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTC 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 231 GAATGGAAAGGACTTCGTGTCACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTA 290
Query 244 ACCGTGGTGCCATCTGCTGCAGCTCTTGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGAC 303
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 291 ACCGTGGTTCCATCTGCTGCAGCTCTCGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGAC 350
Query 304 CGCAAAAAGGTGAAGAACATTAAGCATAACGGTAACATCTCTTTCGATGATGTGATTGAG 363
|| || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 351 CGTAAGAAGGTGAAGAACATTAAGCATAACGGTAACATCTCTTTCGATGATGTGACTGAG 410
Query 364 ATTGCTAGGATTATGAGGCCTAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAG 423
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 ATTGCTAGGATTATGAGGCCTAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAG 470
Query 424 ATTCTTGGGACGTGTGTCTCTGTGGGATGCACTGTTGATGGGAAAGACCCGAAGGATCTT 483
|||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 471 ATTCTTGGAACGTGTGTCTCTGTGGGATGCACTGTTGATGGGAAAGACCCTAAGGATCTT 530
Query 484 CAGCAGGAGATTCAAGAAGGTGAGATCGATATTCCTGAGAACTAAAGGAACAATGGAATT 543
|||||||||||||||||||||||||| || ||||||||||| ||| ||||||||||| ||
Sbjct 531 CAGCAGGAGATTCAAGAAGGTGAGATTGAGATTCCTGAGAATTAA-GGAACAATGGAGTT 589
Query 544 T 544
|
Sbjct 590 T 590
> AT2G37190.1 | Symbols: | Ribosomal protein L11 family protein
| chr2:15619407-15620119 REVERSE LENGTH=713
Length=713
Score = 542 bits (293), Expect = 2e-153
Identities = 439/509 (86%), Gaps = 12/509 (2%)
Strand=Plus/Plus
Query 28 ATGCCGCCGAAGTTGGACCCGAGCCAGATCGTCGATGTGTACGTCCGTGTAACCGGAGGA 87
|||||||| |||||||| ||||| |||||||| || ||||||||||| |||||||| |||
Sbjct 61 ATGCCGCCAAAGTTGGATCCGAGTCAGATCGTTGACGTGTACGTCCGAGTAACCGGGGGA 120
Query 88 GAAGTCGGAGCCGCCAGTTCTCTAGCT-CCAAAGATCGGTCCACTCGGTCTCGCACCAAA 146
||||||||||| || |||||||||||| ||||| |||||||| || ||||||||||||||
Sbjct 121 GAAGTCGGAGCAGCGAGTTCTCTAGCTCCCAAA-ATCGGTCCGCTAGGTCTCGCACCAAA 179
Query 147 GAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAAG-AATGGAAAGGACTT-CGTGTC 204
||||||||||||||| ||||||||||| || || |||| ||||||||||| || |||||
Sbjct 180 GAAGATCGGAGAAGATATCGCGAAAGAAACCGC-AAAGGAATGGAAAGGA-TTACGTGTA 237
Query 205 ACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTCACCGTGGTGCCATCTGCTGCA 264
||||| ||||| || || ||||||||||| || || || || ||||| ||||| || |||
Sbjct 238 ACCGTCAAGCTCACAGTGCAGAATCGTCAGGCGAAAGTGACGGTGGTTCCATCAGCAGCA 297
Query 265 GCTCTTGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGACCGCAAAAAGGTGAAGAACATT 324
|| || ||||||||||||||||| ||||| |||||||| | || |||||||||||||||
Sbjct 298 GCACTCGTCATCAAGGCGTTGAAAGAGCCGGAGAGAGATAGGAAGAAGGTGAAGAACATT 357
Query 325 AAGCATAACGGTAACATCTC-TTTCGATGATGTGATTGAGATTGCTAGGATTATGAGGCC 383
||||||||||| |||||||| ||| |||||||||| ||||||||||||||| ||||| ||
Sbjct 358 AAGCATAACGGGAACATCTCGTTT-GATGATGTGACTGAGATTGCTAGGATCATGAGACC 416
Query 384 TAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAGATTCTTGGGA-CGTGTGTCT 442
|||||||||||||||||| ||||||| || |||||||||||||| |||| | ||||| |
Sbjct 417 TAGATCTATTGCTAAGGAATTGAGTGGAACAGTGAGGGAGATTCT-GGGAACTTGTGTGT 475
Query 443 CTGTGGGATGCACTGTTGATGGGAAAGACCCGAAGGATCTTCAGCAGGAGATTCAAGAAG 502
|||| || || ||||| ||||||||||| || || ||| |||| |||||||||||||| |
Sbjct 476 CTGTTGGTTGTACTGTGGATGGGAAAGATCCTAAAGATATTCAACAGGAGATTCAAGATG 535
Query 503 GTGA-GATCGATATTCCTGAGAACTAAAG 530
|||| | | || ||||||||||||| |||
Sbjct 536 GTGAAGTT-GAGATTCCTGAGAACTGAAG 563
> AT5G60670.1 | Symbols: | Ribosomal protein L11 family protein
| chr5:24380910-24381593 REVERSE LENGTH=684
Length=684
Score = 497 bits (269), Expect = 4e-140
Identities = 431/509 (85%), Gaps = 11/509 (2%)
Strand=Plus/Plus
Query 16 AATCACAGAACCATGCCGCCGAAGTTGGACCCGAGC-CAGATCGTCGATGTGTACGTCCG 74
||||| |||| ||||||||||| ||||| || | | || |||||||| || ||||||||
Sbjct 17 AATCAGAGAA-AATGCCGCCGAAATTGGATCC-ATCTCAAATCGTCGACGTCTACGTCCG 74
Query 75 TGTAACCGGAGGAGAAGTCGGAGCCGCCAGTTCTCTAGCTCCAAAGATCGGTCCACTCGG 134
|| |||||||| || |||||||| || ||| || |||||||||||||||||||||||
Sbjct 75 AGTCACCGGAGGTGAGGTCGGAGCAGCGTCTTCACTCGCTCCAAAGATCGGTCCACTCGG 134
Query 135 TCTCGCACCAAAGAAGATCGGAGAAGACATCGCGAAAGAGACGGCCAAAGAATGGAAAGG 194
||| ||||||||||||||||||||||||||||| |||||||| || ||||||||||||||
Sbjct 135 TCTGGCACCAAAGAAGATCGGAGAAGACATCGCCAAAGAGACAGCGAAAGAATGGAAAGG 194
Query 195 ACTTCGTGTCACCGTGAAGCTGACGGTTCAGAATCGTCAAGCTAAGGTCACCGTGGTGCC 254
||||| |||||||||||||| ||||| ||||||||||||||||||||||| ||||| ||
Sbjct 195 TCTTCGAGTCACCGTGAAGCTTACGGTACAGAATCGTCAAGCTAAGGTCACAGTGGTTCC 254
Query 255 ATCTGCTGCAGCTCTTGTCATCAAGGCGTTGAAGGAGCCAGAGAGAGACCGCAA-AAAGG 313
||| || || ||||| |||||||| || | ||||||||||||||||| | || ||||
Sbjct 255 ATCCGCAGCGGCTCTAGTCATCAAAGCCCTCAAGGAGCCAGAGAGAGATAGGAAGAAAG- 313
Query 314 TGAAGAACATTAAGCATAACGGTAACATCTC-TTTCGATGATGTGATTGAGATTGCTAGG 372
|||||||||| || ||||| || ||||| || ||| |||||||||||||||||||||| |
Sbjct 314 TGAAGAACATCAAACATAATGGCAACATTTCGTTT-GATGATGTGATTGAGATTGCTAAG 372
Query 373 ATTATGAGGCCTAGATCTATTGCTAAGGAGCTGAGTGGGACTGTGAGGGAGATTCTTGGG 432
|| ||| | ||||||||||| |||||||| ||||||| || |||| ||||||| || ||
Sbjct 373 ATAATGCGTCCTAGATCTATCGCTAAGGAATTGAGTGGAACAGTGAAGGAGATT-TTAGG 431
Query 433 A-CGTGTGTCTCTGTGGGATGCACTGTTGATGGGAAAGACCCGAAGGATCTTCAGCAGGA 491
| | ||||||||||| || |||||||||||||| |||||||| |||||||||||| | ||
Sbjct 432 AACTTGTGTCTCTGTTGGTTGCACTGTTGATGGTAAAGACCCTAAGGATCTTCAGGAAGA 491
Query 492 GATTCA-AGAAGGTGAGATCGATATTCCT 519
||| | || ||||| || |||||||||
Sbjct 492 AATTAACAGT-GGTGACATTGATATTCCT 519
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26322693028
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5