BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938255
Length=2827
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53540.1 | Symbols: | unknown protein; LOCATED IN: plasma m... 4292 0.0
AT3G53530.2 | Symbols: NAKR3 | Chloroplast-targeted copper chap... 58.4 4e-07
> AT3G53540.1 | Symbols: | unknown protein; LOCATED IN: plasma
membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING:
14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of
unknown function DUF3741 (InterPro:IPR022212); BEST Arabidopsis
thaliana protein match is: Protein of unknown function
(DUF3741) (TAIR:AT4G28760.2); Has 1710 Blast hits to 868 proteins
in 206 species: Archae - 2; Bacteria - 409; Metazoa -
304; Fungi - 204; Plants - 304; Viruses - 2; Other Eukaryotes
- 485 (source: NCBI BLink). | chr3:19846647-19850968 REVERSE
LENGTH=3231
Length=3231
Score = 4292 bits (2324), Expect = 0.0
Identities = 2668/2831 (94%), Gaps = 36/2831 (1%)
Strand=Plus/Plus
Query 4 TGAACAGTGAGTGAAAGATGAACAGATTTCGACTCAGCGACCTGAGTTCTCGAGATCGAT 63
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 282 TGAACAGTGAGTGAAAGATGAACAGATTTCGACTCAGCGACCTCAGTTCTCGAGATCGAT 341
Query 64 TACCTTCTTCTCAAGTGCCCACTTCTCATCAAGGAAAGAAACAGAAGAGTCAGAAACTCA 123
|| |||| | | ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 342 TAGCTTC--AAC-ACTGCCCACTTCTCACCAAGGAAAGAAACAGAAGAGTCAGAAACTCA 398
Query 124 AATCTTCAAGGTCTTC-T-T-CTGAATTCAACTCTTGTCTTTCTGAAGCTTTGAGTGAAA 180
||||| |||||||||| | | ||||||| |||||||||| || |||||||||||||||||
Sbjct 399 AATCTCCAAGGTCTTCTTCTCCTGAATTTAACTCTTGTCATTGTGAAGCTTTGAGTGAAA 458
Query 181 ACAAGCAAGATTTTCATACTGGGGTACCGATGAAAAGTTTGTTGGCACAAGAAATGTCAA 240
||||||||||||||| |||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 459 ACAAGCAAGATTTTCCTACTGGAGTACCGATGAAAAGTTTGTTAGCACAAGAAATGTCAA 518
Query 241 AGCACAAGGAATCTAAAAAGAGATCACCAAGCATTATAGCCAGATTGATGGGTCTCGATG 300
|||| || ||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 519 AGCAGAAAGAATCTAAAAAGAGATCGCCAAGCATTATAGCGAGATTGATGGGTCTCGATG 578
Query 301 TTTTGCCTTCTCAGAGCTCTCCCCATCGGCAACAAAAGTCTATGGAGAATCAGCAAGGCA 360
|||||||||||||||| ||| | ||| ||||||||||||||||||||||||||||||||
Sbjct 579 TTTTGCCTTCTCAGAGTTCTTCTCATAAGCAACAAAAGTCTATGGAGAATCAGCAAGGCA 638
Query 361 GGAGTGGTGGAGGCAGTTCTTATGATGGTAATAAATCTCTTGGAAGGCGCTCAAAGGGTG 420
||||||||||||||| | | | | | ||||||||||||||| ||||||||||||||
Sbjct 639 GGAGTGGTGGAGGCA---C-T-T-CT--T-ATAAATCTCTTGGAAAGCGCTCAAAGGGTG 689
Query 421 AGCAGAAGTTTAAAGATGTTTTCGAAGTTTTGGATGCAAAGATGGCAGAGAGCAATAGAA 480
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 690 AGCAGAAGTTTAAAGATGTTTTCGAAGTTTTGGATGCAAAGATGGCAGAGAGTAACAGAA 749
Query 481 ACTTATATCATCAGGGGAGGGTGAATGCTAATCTAACACAGGCCGAGATGACATTCATAC 540
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct 750 ACTTATATCATCAGGGGAGGGTGAATGCTAATCTAACACAGGCGGAGATGGCATTCATAC 809
Query 541 GGCAGAAGTTCATGGAGGCTAAGCGGCTATCAACAGATGATAAACTTCGTCATTCTAAAG 600
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 810 GGCAGAAGTTCATGGAGGCTAAGCGGCTATCAACGGATGATAAACTTCGTCATTCTAAAG 869
Query 601 AGTTTAATGATGCCCTTGAGGCTCTAGACTCTAACAAAGACCTCTTACTGAAGTTTCTTC 660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 870 AGTTTAATGATGCTCTTGAGGCTCTAGACTCTAACAAAGACCTCTTACTGAAGTTTCTTC 929
Query 661 AGCACCCAGATTCATTATTTACAAAACATCTGCATGATCTTCAAAGCACACCTCACAAGC 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 930 AGCACCCAGATTCATTATTTACAAAACATCTGCATGATCTTCAAAGCACACCTCACAAGC 989
Query 721 CACAGTACCGTCAAGCACCATCCTTGAAGTCGCCAAACAGCCAGAGGCATGTGGATAGTG 780
|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 990 CACAGTACAGTCAAGCACCATCCTTGAAGTCGCCAAACAGTCAGAGGCATGTGGATAGTC 1049
Query 781 TGAAAACTCAGAAAGTTGATAGGGACTTGTTGAGGAAGAGTCATCAGTCGCCTCATCGGC 840
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1050 TGAAAACTCAGAAAGTTGATAGGGACTTGTTGAGGAAGAGTCATCGGTCGCCTCATCGGA 1109
Query 841 ATGGTGGTGGTGGTAGTGGTTGTCCTAGCCGTTCTCATACTAGGCATACTTCTTATGACA 900
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1110 ATGGTGGTGGTGGTAGTGGTTGTCCTAGCCGTTCTCATACTAGGCATGCTTCTTATGACA 1169
Query 901 CGATTGACTTACCAAATGAGGAGCTGAGAAAGAGGAGTGAGTTGCAGCCAACCAAGATTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1170 CGATTGACTTACCAAATGAGGAGCTGAGAAAGAGGAGTGAGTTGCAGCCAACCAAGATTG 1229
Query 961 TTGTTCTGAAACCTAACCTCGGGGAGCCACGTTATGCTGGTAGAACTTTTGCATCGCCAA 1020
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1230 TTGTTCTGAAACCTAACCTCGGGGAGCCACGTTATGCTGCTAGAACTTTTGCATCGCCAA 1289
Query 1021 GCTCTTCTTCCGATGAGTTCAGAGCAGATCGGAGGCTTCCATGCACCACCAATCATGGCA 1080
||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||
Sbjct 1290 GCTCTTCTTCCGATGAGTTCAGAGCAGATCGTAGGCTTCCATGCACCACCACTCATGGCA 1349
Query 1081 GGCAGAAAAGTAATGAAGATGTCCGCCTTTCAAGACAGAATTCAAGAGATTCTGGAGAAA 1140
|||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1350 GGCAGAAAAGTAATGAAGATGTCCGCCTGTCAAGACAGAATTCAAGAGATTGTGGAGAAA 1409
Query 1141 TGGCCAAAATAATGGCTAGGCAAAGGAAGGCGAGCTGTGGTAATGGTAGTGCCATGAGTT 1200
|||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 1410 TGGCCAAAATAATGTCTAGGCAAAGGAAGGTGAGCTGTGGCAATGGTCGTGCCATGAGTT 1469
Query 1201 TTGAGACTTTAGGATTTAGAGGATATGCAGGGGATGAAAGCTCATCAGGGAGTGACTCTG 1260
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1470 TTGAGACTTCAGGATTTAGAGGATATGCAGGGGATGAAAGCTCATCAGGGAGTGACTCCG 1529
Query 1261 CAAGTGAGTCAGAGCTAGTGCCAGTAACTTCAGGAACAAGAACCGCCTTTAAGCGTAGGA 1320
||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct 1530 CAAGTGAATCAGAGCTAGTGCCAGTAACTTCAGGAACAAGAACCGCCTTCAACCGTAGGA 1589
Query 1321 ACTACCATCGATCTTTGCCTTCCAAGTCAACAACATCATCTGTGAGTAGGGAAGCCAAGA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1590 ACTACCATCGATCTTTGCCTTCCAAGTCAACAACATCATCTGTGAGTAGGGAAGCTAAGA 1649
Query 1381 GGAGACTGTCAGAGAGATGGAAGCTGACACACAAGTTTGAGCACGAGATAGAAATTAGTA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 GGAGACTGTCAGAGAGATGGAAGCTGACACACAAGTTTGAGCACGAGATAGAAATTAGTA 1709
Query 1441 GAAGTGGGACATTAGCTGAAATGCTTGCAACTTCAGATAGGGAGGCAAGGCCAGCAAGTT 1500
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1710 GAAGTGGGACATTAGCTGAAATGCTTGCCACTTCAGATAGGGAGGCAAGGCCAGCAAGTT 1769
Query 1501 TTAATGGACTCAGTTTCGAAGATGGGATTAGTAAAAGATTTGAGAACAACATTCATTGGT 1560
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1770 TTAACGGACTCAGTTTCGAAGATGGGATTAGTAAAAGATTTGAGAACAACATTCAGTGGC 1829
Query 1561 CTGAATTGCCAGAGCCGGTTGGAATCAGCAGTAGGGATGGTTGGAAAGGATCCTGCTCAA 1620
||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1830 CTGAACTGCCAGAACCAGTTGGAATCAGCAGTAGGGATGGTTGGAAAGGATCCTGCTCAA 1889
Query 1621 GAAGTTTTTCAAAACCCAAAACCATCATGAACCAGGAAAGCACTTGTGGTGGTTACACCA 1680
|||||||||||||| ||| |||||||||||||||||| ||| || | | |||||||||||
Sbjct 1890 GAAGTTTTTCAAAATCCAGAACCATCATGAACCAGGAGAGCGCT-G-G-TGGTTACACCA 1946
Query 1681 TAGTGTTGCCTAAGGGGTTGATCAATCGAGATGGATTAGTGCAGGGGAATTCTTCTCATC 1740
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||
Sbjct 1947 TAGTGTTGCCTAAGGGGTTGATCAATCGAGATGCATTAGTGCAGGGGGATTCTTCTCATC 2006
Query 1741 ATGGAGAGCCTTCCTTATCAAACAAATCTAGACCCGGCAGTAACAAATCTCATTCATCAT 1800
| |||||| ||| ||| |||| |||||||||||| |||||||||||||||||||||||||
Sbjct 2007 ACGGAGAGTCTTTCTTGTCAAGCAAATCTAGACCTGGCAGTAACAAATCTCATTCATCAT 2066
Query 1801 ACAATAGTTCGCCAGAGGTCAGCATCACCCCAAGTTTAAGCAAGTTTGTTTATATGAACG 1860
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2067 ACAATAGTTCGCCAGAGGTCAGCATCACCCCAAGTTTAAGCAAGTTTGTTTATATGAACG 2126
Query 1861 AAGGGGTTCCAA--AAGAAAAGCTCTCTCCTTTTCAAGCACGTAACAGTTTCTCAGGAGA 1918
| ||| |||||| ||| | || ||||||||| ||||||||| |||||||||||||||
Sbjct 2127 ACGGGATTCCAAGCAAGTCA-GCA-TCTCCTTTTAAAGCACGTAGCAGTTTCTCAGGAGA 2184
Query 1919 TGCAAATTCAGACACTGAGGATAGTTCAGCTTCTGATGATATCAAGACAGCAATGTCTTC 1978
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 2185 TGCAAATTCAGACACTGAAGATAGTTCAGCTTCTGATGATATCAAGACAGCAATGTCTTC 2244
Query 1979 TGAGGCTCTAGATTTGTCAACTGTCACCTCGGTAACTGACCCTGATATCTCAAGGAGGAC 2038
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2245 TGAGGCTCTAGATTTGTCAACTGTCACCTCGGTAACTGACCCTGATATCTCAAGGAGGAC 2304
Query 2039 AACTGAAGATGTGAATCATTCTTCGGCTCCTGAGCCAC-A--GTCTCATGAAAGCTTAAA 2095
|||||| ||||||||||||||||||| |||||| |||| | | ||| |||||||| |||
Sbjct 2305 AACTGAGGATGTGAATCATTCTTCGGTTCCTGATCCACCACAGCCTCGTGAAAGCTCAAA 2364
Query 2096 AGAAGGAGATCAACCAAGTCCGGTTTCAGTTCTAGAAGCTTCTTTCGACGATGATGTTTC 2155
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 2365 GGAAGGAGATCAACCAAGTCCGGTTTCAGTTCTAGAAGCTTCGTTCGACGATGATGTATC 2424
Query 2156 ATCAGGTTCTGAATGCTTTGAGAGTGTTAGTGCGGATCTCCAAGGACTCAGGATGCAACT 2215
||||||||| |||||||||||||||||||| |||||||||| ||||||||| ||||||||
Sbjct 2425 ATCAGGTTCGGAATGCTTTGAGAGTGTTAGCGCGGATCTCCGAGGACTCAGAATGCAACT 2484
Query 2216 TCAACTCCTCAAACTCGAGTCAGCTAGTTACAATGAAGGTCGTATGCTCATTTCGAGTGA 2275
||| ||||||||||| |||||||||| |||||| |||||| | |||||| ||||||||||
Sbjct 2485 TCAGCTCCTCAAACTAGAGTCAGCTACTTACAAAGAAGGTGGCATGCTCGTTTCGAGTGA 2544
Query 2276 TGAAGAAGACACAGATCAAGAGGAGTCATCCACAATAACTGATGAGGCGATGATTACCCA 2335
|||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 2545 TGAAGA---CACTGATCAAGAGGAGTCATCCACAATAACTGATGAGGCTATGATTACCAA 2601
Query 2336 TGAGCTCGGAGAAGAAGACTGGAGGTCATTATACTTAGTTGATCTTCTAGCCAACTCCAA 2395
|||||| ||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 2602 GGAGCTCAGAGAAGAAGACTGGAAGTCATCATACTTAGTTGATCTCCTAGCCAACTCCAG 2661
Query 2396 TTTCAGTGGCTCAGACCACAGCATTGTCATGGCAACAACAACACCTGTAGATCCATCCTT 2455
|||||||| ||||||||||| ||||||||||||||||||| | | |||||| ||||||||
Sbjct 2662 TTTCAGTGACTCAGACCACAACATTGTCATGGCAACAACA-C-C-TGTAGAGCCATCCTT 2718
Query 2456 GTTTGAGGATCTCGAGAAGAAGTATTCCAGCGTGAAAACCTCAACCCGGCTAGAAAGGAA 2515
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||
Sbjct 2719 GTTTGAGGATCTCGAGAAGAAGTACTCCAGCGTGAAAACCTCAACCCGGTTAGAAAGAAA 2778
Query 2516 GCTCCTATTTGACCAGATCAGTAGAGAAGTACT-CTATATGTTAAAGCAGTTTTCGGATC 2574
||| || |||||||||||||| ||||||||||| | |||||||||||||||| |||||||
Sbjct 2779 GCTTCTTTTTGACCAGATCAGCAGAGAAGTACTAC-ATATGTTAAAGCAGTTGTCGGATC 2837
Query 2575 CACACCCTTGGGTTAAATCCACAAGGGTATGCCCGAAATGGGATGCAAACAAGATTCAAG 2634
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 2838 CACACCCTTGGGTTAAATCCACAAAGGTATGCCCGAAATGGGATGCAAACAAGATACAAG 2897
Query 2635 AGACTCTTCAAGAATTGGTCACAAGAAAAGATGAGAAACCAAGCAAAGATAATGTGGAGG 2694
||||||| | ||| ||||||||||||||||| ||||||||||||||| || |||||||||
Sbjct 2898 AGACTCTGCGAGATTTGGTCACAAGAAAAGACGAGAAACCAAGCAAATATGATGTGGAGG 2957
Query 2695 AG--G-AGTTGCAGTGGCTGAGCTTAGAAGATGACATTGAAATCATAGGTAGAGAGATTG 2751
|| | |||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 2958 AGAAGGAGTTGCAGTGGCTGAGTTTAGAAGATGACATTGAAATCATAGGTAGAGAGATTG 3017
Query 2752 AGGAAATGCTGACAGATGAACTCATAACAGAGCTTGTGGTAGGTGCAATCTTCTAGAAAG 2811
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3018 AGGTAATGCTGACAGATGAACTCATAACAGAGCTTGTGGTAGGTGCAATCTTCTAGAAAG 3077
Query 2812 TTAAATAATCT 2822
|||||||||||
Sbjct 3078 TTAAATAATCT 3088
> AT3G53530.2 | Symbols: NAKR3 | Chloroplast-targeted copper chaperone
protein | chr3:19845097-19846820 FORWARD LENGTH=1086
Length=1086
Score = 58.4 bits (31), Expect = 4e-07
Identities = 31/31 (100%), Gaps = 0/31 (0%)
Strand=Plus/Minus
Query 2792 AGGTGCAATCTTCTAGAAAGTTAAATAATCT 2822
|||||||||||||||||||||||||||||||
Sbjct 1086 AGGTGCAATCTTCTAGAAAGTTAAATAATCT 1056
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 140467440400
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5