BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938259
Length=1063
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53560.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 1725 0.0
AT2G37400.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 556 1e-157
> AT3G53560.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:19859627-19861031 REVERSE LENGTH=1405
Length=1405
Score = 1725 bits (934), Expect = 0.0
Identities = 1021/1063 (96%), Gaps = 6/1063 (1%)
Strand=Plus/Plus
Query 1 ATCTATCTCTTTCCGCAATCATGGAGTCTCTGGGGAAGCTACAACTACATCACCAACCAT 60
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 36 ATCTATCTCATTCCGCAATCATGGAGTCTCTGGGGAAGCTACAGCTACATCACCAGCCAT 95
Query 61 TTCAACTTTCCTTCACTCACACTTCTTCTTCATCGTTCCCAAAAAACCTCTTCAGGA-CC 119
|||| ||||||||||||||||| ||||||||| | ||||| ||||||||||||| | ||
Sbjct 96 TTCACCTTTCCTTCACTCACACCTCTTCTTCAACATTCCCCAAAAACCTCTTCA-AATCC 154
Query 120 TCAATTCGACCAATTTCATCTTTCAAATCCGCTTCAATCAAAGCTTCGTCCTCCAAATTT 179
||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 155 TCAATTCAACCAATTTCATCTCTCAAATCCGCTTCAATTAAAGCTTCGTCCTCCAAATTT 214
Query 180 CAAGACTCTATCACCCCTCTCCCAAAGTCCACACCTTTCCGTCTCTTGAAATCCACATGC 239
||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 215 CAAAACTCTATCACCCCTCTCCCAAAGTCCACACCTTTCCGTCTCTTCAAATCCACATGC 274
Query 240 ATCACTCTAACAACCGCCGCGGCGCTGCTTTTGGCGAATCTCCACCTCAAATCGCCGGCG 299
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 275 ATCACTCTAACAACCGCCGCGGCTCTGCTTTTGGCGAATCTCCATCTCAAATCGCCGGCG 334
Query 300 ATTGCAGCTCCCGTCGCGCCTCCGCCGTCAGTTGAAAGCAAAGAAAACGTTACCTTGGAA 359
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 ATTGCAGCTCCCATCGCGCCTCCGCCGTCAGTTGAAAGCAAAGAAAACGTTACCTTGGAA 394
Query 360 GAAGAAGAGAGAGCGCTTGATGAGCATTTGATAACTCACCCTTCTGATGTCGACGCTCTT 419
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 395 GAAGAAGAGAGAGCGCTTGATGAGCATTTGATTACTCACCCTTCTGATGTCGACGCTCTT 454
Query 420 CGTTCCTTGATGGAGGTAAAGATCAGATCTCGAAAGCTTACAGAAGCCGTAGAAGTGATC 479
||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||
Sbjct 455 CGTTCATTGATGGAGGTAAAGATCAAATCTCGAAAGCTTACAGAAGCAGTAGAAGTGATC 514
Query 480 GATCGTCTT-ATAAAATTGGAACCTGAAGAAAAAGAATGGCCAGTTTTGAAAGCAAACAT 538
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 515 GATCGT-TTGATAAAATTGGAACCTGAAGAAAAAGAATGGCCAGTTTTGAAAGCTAACAT 573
Query 539 CTTCACCTACAGTGGAGATTTAGATTTAGCTAAAACTGGATTTGAAGAGATTCTGGCTAA 598
||| ||||||||||||||| |||| || ||||||||||||||||||||||||||||||||
Sbjct 574 CTTTACCTACAGTGGAGATCTAGACTTGGCTAAAACTGGATTTGAAGAGATTCTGGCTAA 633
Query 599 AGATCCGCTTCGTGTTGAAGCTTATCACGGCTTGCTTATGGCTTATTCCGATGCAGGTCT 658
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 634 AGATCCGCTTCGTGTTGAAGCTTATCACGGCTTGCTTATGGCTTATTCAGATGCAGGTCT 693
Query 659 TGATTTGAAAGAGGTGGAGAGTAGAATTGAGGAAGCAATGTTGAAGTGCAAAAAAGAGAA 718
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 694 TGATTTGAAAGAGGTGGAGAGTAGAATTGAGGAAGCAATGTTGAAGTGCAAAAAGGAGAA 753
Query 719 TAATCATAACGATTTTCGGGATTTTAAGCTACTCGTGGCACAGATTCGGGTCATTGAAGG 778
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 754 TAATCAAAACGATTTTCGGGATTTTAAGCTACTCGTGGCGCAGATTCGGGTCATTGAAGG 813
Query 779 AAAGCATAGTGAAGCATTGAAGCTTTATCAAGAGCTTGTGAAA-GAGGAACCAAGAGATT 837
||| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 814 AAAACATAGTGAAGCATTGAAGCTTTATCAAGAGCTTGT-AAAGGAGGAACCAAGAGATT 872
Query 838 TCAGGCCGTATCTTTGTCAGGGAATAATATACACATTGCTGAAGAAGAAAGACAAGGCAG 897
| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 873 TTAGGCCGTATCTTTGTCAGGGAATTATATACACATTGCTGAAGAAGAAAGACAAGGCAG 932
Query 898 AAGAACAGTTTGATAACTTTCGGAAACTTGTTCCAAAGAATCATCCTTATAGAGAGTATT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 933 AAGAACAGTTTGATAACTTTCGGAAACTTGTTCCAAAGAATCATCCTTATAGAGAGTATT 992
Query 958 TTATGGATAATATGATAGCAACAAAGCTTTTTTCGGAGAAGGCGCAGCGTGAGATGGCTG 1017
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 993 TTATGGATAATATGATAGCAACAAAGCTTTTTTCCGAGAAGGCGCAGCGTGAGATGGCTG 1052
Query 1018 AGGAGATGGCTGGATCAAGTAGTTGATGAGATTATGTGTAATG 1060
|||||||||||||||||| |||||||||||| |||||||||||
Sbjct 1053 AGGAGATGGCTGGATCAACTAGTTGATGAGAATATGTGTAATG 1095
> AT2G37400.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr2:15696155-15697402 REVERSE LENGTH=1248
Length=1248
Score = 556 bits (301), Expect = 1e-157
Identities = 569/697 (82%), Gaps = 24/697 (3%)
Strand=Plus/Plus
Query 334 AAAGCAAAGAAAACGTTACCTTGGAAGAAGAAGAGAGAGCGCTTGATGAGCAT-TTGATA 392
|||| || | ||||||| | || ||||||||||||||| | || || ||| || ||| |
Sbjct 350 AAAGTAACGGAAACGTTTCATTTGAAGAAGAAGAGAGATCACTCGAAGAGTATCTTGCT- 408
Query 393 ACTCACCCTTCTGATGTCGACGCTCTTCGTTCCTTGATGGAGGTAAAGATCAGATCTCGA 452
|||||||| |||||| || ||||| || || || |||||||||| ||||| |||||||
Sbjct 409 TCTCACCCTGATGATGTTGAAGCTCTACGATCTTTAATGGAGGTAAGGATCAAATCTCGA 468
Query 453 AAGCTTAC-AGAAGCCGTAGAAGTGATCGAT-CGTCTTATAAAATTGGAACCTGAAGAAA 510
|||||| | |||||| ||||| |||| ||| || | || |||||||||| || || |
Sbjct 469 AAGCTT-CTAGAAGCTATAGAATTGATTGATAGGT-TGATTGAATTGGAACCAGAGGAGA 526
Query 511 AAGAATGGCCAGTTTTGAAAGCAAACATCTTCACCTACAGTGGAGATTTAGA-TTTAGCT 569
| ||||||||| | |||||||| || ||||| | ||||||||||||||||| | | |||
Sbjct 527 AGGAATGGCCAATGTTGAAAGCTAATATCTTTAGTTACAGTGGAGATTTAGAGTCT-GCT 585
Query 570 AAAACTGGATTTGAAGAGATTCT-GGCTAAAGATCCGCTTCGTGTTGAAGCTTATCACGG 628
|||||||| |||||||||||||| | | ||||||||||||||||| || |||||||||||
Sbjct 586 AAAACTGGTTTTGAAGAGATTCTAGTC-AAAGATCCGCTTCGTGTCGAGGCTTATCACGG 644
Query 629 CTT-GCTTATGGCTTATTCCGATGCAGGTCTTGATTTGAAAGAGGTGGAG-AGTAGAATT 686
|| | ||||||||||||| ||| | ||| ||||||||| | |||||| || ||||||
Sbjct 645 TTTAG-TTATGGCTTATTCTGATTCTGGTGATGATTTGAATGCTGTGGAGAAG-AGAATT 702
Query 687 GAGGAAGCAAT-GTTGAAGTGCAAAAAAGAGAATAATCATAACGATTTTCGGGATTTTAA 745
||||| ||||| ||| | |||||| || ||||| |||| ||| || || | ||||||||
Sbjct 703 GAGGAGGCAATGGTT-AGGTGCAAGAAGGAGAAGAATCGTAAGGACTTGAGAGATTTTAA 761
Query 746 GCTACTCGTGGCACAGATTCGGGTCATTGAAGGAAAGCATAGTGAAGCATTGAAGCTT-T 804
|||||| ||||| || |||||||| |||||||| ||||||| ||||||||||||| || |
Sbjct 762 GCTACTAGTGGCGCAAATTCGGGTTATTGAAGGGAAGCATAATGAAGCATTGAAG-TTGT 820
Query 805 ATCAAGAGCTTGTGAAAGAGGAACCAAGAGATTTCAGGCCGTATCTTTGTC-AGGGAATA 863
|| | ||||||||||| || || || |||||||||||||||||||| |||| |||| ||
Sbjct 821 ATGAGGAGCTTGTGAAGGAAGAGCCGAGAGATTTCAGGCCGTATCTATGTCAAGGG-ATT 879
Query 864 ATATACACATTGCTGAAGAA-GAAAGACAAGGCAGAAG-AACAGTTTGATAACTTTCGGA 921
||||||||| || ||||||| || | | |||| | || |||||||||| || ||| |||
Sbjct 880 ATATACACAGTGTTGAAGAAGGAGA-ATGAGGC-GGAGAAACAGTTTGAGAAGTTTAGGA 937
Query 922 AACTTGTTCCAAAGAATCATCCTTATAGAGAGTATTTTATGGATAATATGATAGCAACAA 981
|||||| || ||||||||||||||||||||||||||||||||||||||| | || | |
Sbjct 938 GACTTGTCCCGAAGAATCATCCTTATAGAGAGTATTTTATGGATAATATGGTTGCTTCGA 997
Query 982 AGCTTTTTTCGGAGAAGGCGCAGCGTGAGATGGCTGA 1018
|||| ||| | ||||||| ||||| |||||||||||
Sbjct 998 AGCTCTTTGCCGAGAAGGTACAGCGAGAGATGGCTGA 1034
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52057965165
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5