BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938260
Length=1451
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53570.1 | Symbols: AFC1, AME2, FC1 | FUS3-complementing gen... 2377 0.0
> AT3G53570.1 | Symbols: AFC1, AME2, FC1 | FUS3-complementing gene
1 | chr3:19861300-19864499 REVERSE LENGTH=1927
Length=1927
Score = 2377 bits (1287), Expect = 0.0
Identities = 1396/1447 (96%), Gaps = 13/1447 (1%)
Strand=Plus/Plus
Query 1 TTTGCATTTTTATAACCCTTTATGCAAAGCAGTGTGTATCGTGATAAAGCTAGCTCGATC 60
||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 354 TTTGCATTTTTCTAATCCTTTATGCAAAGCAGTGTGTATCGTGATAAAGCTAGCTCGATC 413
Query 61 GCGATGATCTTGGAAACTCAGAGGAATGTTGAATTCCCTCATAGGATCGTTGATAAGCGT 120
||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 414 GCGATGATCTTAGAAACTCAGAGGAATGTTGAATTCCCTCATCGGATCGTTGATAAGCGT 473
Query 121 CCCAGGAAACGGCCTCGATTGGCTTGGGATGCTGCTGCGCCTCTTCTtcctcctcctcct 180
||||||||||| || |||||| |||||||||||||| || | | || | | || ||||
Sbjct 474 CCCAGGAAACGTCCCCGATTGACTTGGGATGCTGCTCCG-C-C-TC-T--T-CT--TCCT 524
Query 181 cctcctcctccACCCACGGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGT 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 CCTCCTCCTCCACCCACGGTATTTCAACCTCCGTTGTACTATGGTCCGGAGTTTGCGAGT 584
Query 241 GGAGTAGTTCCCAATTTTGTTTACCCAAACATGTTCTATAATGGCCTTCCTCGTCAGGGC 300
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GGTTTAGTTCCCAATTTTGTTTACCCAAACATGTTCTATAATGGCCTTCCTCGTCAGGGC 644
Query 301 TCTCCTCCCTGGAGACCAGATGATAAAGACGGCCATTATGTCTTTGTTGTTGGAGATACT 360
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 645 TCTCCTCCCTGGAGACCAGATGATAAAGACGGCCATTATGTCTTTGTTGTTGGGGATACT 704
Query 361 TTGACTCCACGATATCAAATTCTCAGCAAAATGGGTGAAGGTACATTTGGACAAGTATTG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTGACTCCACGATATCAAATTCTCAGCAAAATGGGTGAAGGTACATTTGGACAAGTATTG 764
Query 421 GAATGTTTTGATAATAAAAACAAAGAAGTCGTGGCAATCAAAGTTATACGGTCCATAAGC 480
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 765 GAATGCTTTGATAATAAAAACAAAGAAGTCGTGGCAATCAAAGTTATACGGTCCATAAAC 824
Query 481 AAGTATCGTGAAGCTGCCATGATAGAAATTGACGTGCTGCAAAGGCTTACAAGGCATGAT 540
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 825 AAGTATCGTGAAGCTGCCATGATCGAAATTGACGTGCTGCAGAGGCTTACAAGGCATGAT 884
Query 541 GTTGGTGGTTCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGT 600
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 885 GTCGGTGGTTCTCGTTGTGTGCAAATACGGAATTGGTTTGACTATCGTAATCATATTTGT 944
Query 601 ATTGTATTTGAGAAGCTTGGGCCAAGCTTATATGATTTTCTCCGCAAAAACAGCTACCGT 660
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 945 ATTGTATTTGAGAAGCTTGGACCAAGCTTATATGATTTTCTCCGCAAAAACAGCTACCGT 1004
Query 661 TCATTTCCCATTGACCTTGTTCGGGAGCTTGGCAGACAACTTTTGGAGTCTGTAGCATAT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1005 TCATTTCCCATTGATCTTGTTCGGGAGCTTGGCAGACAACTTTTGGAGTCTGTTGCATAT 1064
Query 721 ATGCATGATTTACGGCTGATCCACACAGATTTGAAGCCGGAGAACATTCTTTTGGTATCG 780
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1065 ATGCATGATTTACGGCTGATCCACACGGATTTGAAGCCGGAGAACATTCTTTTGGTATCG 1124
Query 781 TCTGAATATATCAAAATACCTGATTATAAGTTTCTGTCACGACCCACGAAAGATGGGTCA 840
||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||
Sbjct 1125 TCTGAATATATCAAAATACCTGATTATAAGTTTCTATCCCGACCCACAAAAGATGGGTCA 1184
Query 841 TACTTCAAGAATCTACCCAAGTCAAGTGCCATCAAGCTCATTGATTTCGGAAGTACAACA 900
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1185 TACTTCAAGAATCTGCCCAAGTCAAGTGCCATCAAGCTCATTGATTTCGGAAGTACAACA 1244
Query 901 TTTGAACATCAAGACCATAACTACATTGTATCCACAAGGCATTACCGCGCACCAGAAGTT 960
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1245 TTTGAACATCAAGACCATAACTACATTGTATCCACAAGACATTACCGCGCACCAGAAGTT 1304
Query 961 ATCTTAGGGGTTGGATGGAACTATCCATGCGATCTGTGGAGTATTGGTTGCATACTTGTT 1020
||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1305 ATCCTAGGGGTTGGATGGAACTATCCATGTGATCTGTGGAGTATTGGTTGCATACTTGTT 1364
Query 1021 GAACTTTGTTCGGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAGCATTTGGCCATG 1080
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1365 GAACTTTGTTCGGGAGAGGCGCTTTTCCAAACGCATGAAAACTTGGAACATTTGGCCATG 1424
Query 1081 ATGGAAAGGGTCTTGGGACCACTACCGCCTCATATGGTGCTCAGAGCCGACCGGCGCTCT 1140
|||||||||||| | ||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1425 ATGGAAAGGGTCCTAGGACCTTTACCACCTCATATGGTGCTCAGAGCCGACCGGCGCTCT 1484
Query 1141 GAGAAATACTTCAGGCGAGGCGCAAAGTTAGACTGGCCTGAAGGTGCGACATCAAGAGAC 1200
|||||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 1485 GAGAAATACTTCAGACGAGGTGCGAAGTTAGACTGGCCTGAAGGTGCGACATCAAGAGAC 1544
Query 1201 AGCTTAAAAGCAGTGTGGAAACTTCCCCGGCTACCGAACCTGATAATGCAGCATGTGGAT 1260
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 AGCTTAAAAGCAGTATGGAAACTTCCCCGGCTACCGAACCTGATAATGCAGCATGTGGAT 1604
Query 1261 CACTCAGCCGGTGATCTGATAGACCTATTACAAGGTCTGCTTCGATATGATCCAACAGAG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 CACTCAGCCGGTGATCTGATAGACCTATTACAAGGTCTGCTTCGATATGATCCAACAGAG 1664
Query 1321 AGGTTCAAGGCAAGAGAAGCACTGAACCATCCCTTCTTCACAAGAAGCCGGGAACAGAGT 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1665 AGGTTCAAGGCAAGAGAAGCACTGAACCATCCCTTCTTCACAAGAAGCCGGGAACAGAGT 1724
Query 1381 ATACC-C--TTCAACCCAAACCCTCATCCATTTTTATACAACCAAAAGAACTaaaaaa-a 1436
||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1725 ATACCACCCTTCAACCCAAACCCTCATCCATTTTTATACAACCAAAAGAACTAAAAAAGA 1784
Query 1437 GAAGAAA 1443
||||||
Sbjct 1785 AAAGAAA 1791
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71535776625
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5