BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938261
Length=1134
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53580.1 | Symbols: | diaminopimelate epimerase family prot... 1888 0.0
> AT3G53580.1 | Symbols: | diaminopimelate epimerase family protein
| chr3:19864757-19867134 FORWARD LENGTH=1343
Length=1343
Score = 1888 bits (1022), Expect = 0.0
Identities = 1096/1132 (97%), Gaps = 4/1132 (0%)
Strand=Plus/Plus
Query 5 AAA-AATCTGAAAGCAGCCATGGAGATAGCCGCCGCTAGCAGTGTCTCCGTCGCGCCACA 63
||| |||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 10 AAATAATCTG-AAGCAGCCATGGAGATAGCCGCCGTTAGCACTGTCTCCGTCGCGCCACA 68
Query 64 ATCGCGTCA-ACTGTTGAATGTGTTCTCCAGGAAGCTAGGATCCGTCTCTTCTCTTTCGT 122
|||||| || | ||| ||||| |||||||||||| ||||||||||| |||||||||||||
Sbjct 69 ATCGCG-CAGAGTGTCGAATGCGTTCTCCAGGAATCTAGGATCCGTATCTTCTCTTTCGT 127
Query 123 TTGGTTTCTTTGAGAAAGAATATTGCTTTAAGAGCCCTAGCCTTCGTGTGTCTGCAGCAG 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 128 TTGGTTTCTTTGAGAAAGAATATTGCTTTAAGAGCCCTAGCCTTCGTGTGTCTGCAGCAG 187
Query 183 CTTCCATGGACGCCGTCACTGCTGAGAAATTTTCTCCGGCGAGTTTTCTAGACAAAAAAG 242
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 188 CTTCCATGGACGCCGTCACAGCTGAGAAATTTTCTCCGGCGAGTTTTCTAGACAAAAAAG 247
Query 243 AAACCGGAGTTCTTCATTTTGTGAAGTACCATGGCCTCGGCAATGACTTCATTTTGGTCG 302
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 248 AAACCGGAGTTCTTCACTTTGTGAAATACCATGGCCTCGGCAATGACTTCATTTTGGTCG 307
Query 303 ATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCGAAGCTTTGCGATC 362
|||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 308 ATAACAGAGACTCATCGGAACCTAAGATTACTCAAGAACAGGCGGCGAAGCTGTGTGATC 367
Query 363 GAAACTTCGGTGTTGGTGCCGATGGAGTGATTTTTGCAATGCCAGGAGTCAATGGTACTG 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 368 GAAACTTCGGTGTTGGTGCCGATGGAGTGATTTTTGCAATGCCAGGAGTCAATGGTACTG 427
Query 423 ATTACTCTATGCGGATATTCAATTCAGATGGTAGTGAACCAGAGATGTGTGGCAATGGAG 482
||||| | |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 428 ATTACGCAATGCGGATTTTCAATTCAGATGGTAGTGAACCAGAGATGTGTGGCAATGGAG 487
Query 483 TTCGATGCTTTGCCAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGGAAGCATAGTTTTA 542
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 488 TTCGATGCTTTGCTAGGTTCATTGCTGAGCTTGAGAATTTGCAGGGAAAACATAGTTTTA 547
Query 543 CAATACATACCGGTGCTGGCTTGATTGTTCCAGAAATTCAAGATGACGGACAGGTTAAGG 602
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 548 CAATACATACCGGTGCCGGGTTGATTGTTCCAGAAATTCAAGATGACGGACAGGTTAAGG 607
Query 603 TTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGAAGTTGCCAGGGAACA 662
|||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||
Sbjct 608 TTGACATGGGGACACCGATTCTTAAAGCACAAGATGTGCCCACGAAATTGTCAGGGAACA 667
Query 663 AAGGTGAAGCTGTTGTTCAGGCAGAGCTAGTTGTTGATGGAGAAAGCTGGAATGTGACGT 722
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 668 AAGGTGAAGCTGTTGTTGAGGCAGAGCTAGTTGTTGATGGAGTAAGCTGGAATGTGACGT 727
Query 723 GTGTTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGCGGGCCGAATCTGA 782
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 728 GTGTTAGTATGGGCAATCCTCACTGTATCACATTTGGTAAAAAGGGTGGACCGAATCTGA 787
Query 783 AAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGCATCATGAAATGTTCC 842
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 788 AAGTTGATGATTTGAACTTACCAGAGATTGGTCCAAAGTTCGAGCATCATGAAATGTTCC 847
Query 843 CAGCTCGAACTAACACAGAATTTGTTGAGGTCTTATCACGTTCTCATTTGAAAATGCGTG 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 848 CAGCTCGAACTAACACAGAATTTGTTGAGGTCTTATCACGTTCTCATTTGAAAATGCGTG 907
Query 903 TGTGGGAGCGCGGAGCAGGAGCAACTTTGGCCTGTGGAACTGGAGCCTGTGCTCTGGTTG 962
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 908 TGTGGGAGCGCGGAGCAGGAGCAACTTTGGCCTGTGGAACTGGAGCTTGTGCTCTGGTTG 967
Query 963 TTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGAAATGCACGGTGGATCTACCGGGCGGAC 1022
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 968 TTGCAGCAGTCCTTGAAGGTCGAGCCGACAGGAAATGCACGGTGGATCTACCGGGCGGAC 1027
Query 1023 CATTGGAAATAGAGTGGAAACAGGAAGACAACCATATCTACATGACAGGTCCTGCGGAAG 1082
||||||| |||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1028 CATTGGAGATAGAGTGGAAACAGGAAGACAACCATATCTACATGACGGGTCCTGCAGAAG 1087
Query 1083 CTGTTTTCTACGGATCAGCGCTGCTCTAATGGGACTTCACAGTCGATGACTT 1134
|||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1088 CTGTTTTCTATGGATCAGCGCTGCTCTAATGGGCCTTCACAGTCGATGACTT 1139
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55622203860
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5