BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938262
Length=2381
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53590.1 | Symbols: | Leucine-rich repeat protein kinase fa... 3768 0.0
AT4G20270.1 | Symbols: BAM3 | Leucine-rich receptor-like protei... 58.4 3e-07
> AT3G53590.1 | Symbols: | Leucine-rich repeat protein kinase
family protein | chr3:19867379-19871651 REVERSE LENGTH=2352
Length=2352
Score = 3768 bits (2040), Expect = 0.0
Identities = 2254/2356 (96%), Gaps = 20/2356 (1%)
Strand=Plus/Plus
Query 22 ATGTGGAACAACCTGACTGGGCGTATTCCTTTGGAGATAGGAAGAATTTCTTCCTTGAAA 81
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1 ATGTGGAACAACCTGACTGGGCGTATTCCGTTGGAGATAGGAAGAATTTCTTCCTTGAAA 60
Query 82 CTCCTACTGTTGAATGGGAACAAGTTCACGGGTAGTTTACCCCCTGAACTTGGTAATCTT 141
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 61 CTCCTACTGTTGAATGGGAACAAGTTCACGGGTAGTTTACCCCCTGAACTTGGTAACCTT 120
Query 142 CAAAACCTAAACAGGCTTCAAGTAGATGAGAACAACATAACAGGTTCAGTTCCATTTTCA 201
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CAAAACCTAAACAGGCTTCAAGTAGATGAGAATAACATAACAGGTTCAGTTCCATTTTCA 180
Query 202 TTTGGAAACTTGAGAAGCATAAAACATCTCCACTTGAATAATAACACTATAAGCGGAGAA 261
||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||||||
Sbjct 181 TTTGGAAACTTGAGAAGCATAAAACATCTCCACTTAAACAATAACACGATAAGTGGAGAA 240
Query 262 ATTCCGGTTGAGCTATCCAAATTGCCCAAGCTTGTTCACCTGATTCTGGACAACAATAAC 321
||||| ||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 241 ATTCCTGTTGAGCTATCCAAATTGCCCAAGCTTGTTCACATGATACTGGACAACAATAAC 300
Query 322 TTGACTGGGACATTGCCGCCAGAGTTAGCTCAATTGCCATCCTTGACCATACTTCAGCTG 381
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGACTGGGACATTGCCGCTAGAGTTAGCTCAATTGCCATCCTTGACCATACTTCAGCTG 360
Query 382 GATAACAACAACTTCGAAGGTTCAACGATTCCAGAGGCTTATGGAGACTTTTCTAGATTA 441
|||||||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||
Sbjct 361 GATAACAACAACTTCGAAGGTTCAACTATTCCAGAGGCTTACGGACACTTTTCTAGATTA 420
Query 442 GTAAAATTAAGTTTAAGGAACTGTGGACTGCAAGGATCAATTCCTGATTTAAGCAGGATA 501
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 421 GTAAAATTAAGTTTAAGGAACTGTGGACTGCAAGGATCTATTCCTGATTTAAGCAGGATA 480
Query 502 CCAAATCTTAGCTATCTAGACCTAAGTTGGAACAACCTCACAGGGACTATACCAGAATCC 561
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||
Sbjct 481 GAAAATCTTAGCTATCTAGACCTAAGTTGGAACCACCTCACAGGCACTATACCAGAATCC 540
Query 562 AAGCTTTCTGACAATATGACAACAATTGAACTATCTTATAACCAACTAACTGGATCTATA 621
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 541 AAGCTTTCTGACAATATGACAACAATTGAACTATCTTATAACCACCTAACTGGATCTATA 600
Query 622 CCACAAAGTTTCTCAGAGTTGGGCTCTCTTCAATTACTGTCACTTGAGAACAACAGTTTA 681
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 601 CCACAAAGTTTCTCAGATTTGAACTCTCTTCAATTACTGTCACTTGAGAACAACAGTTTA 660
Query 682 TCTGGTTCTGTCCCAACAGAAATTTGGCAGGACAAGTCTTTCGAGAATAACAAGCTGCAA 741
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 TCTGGTTCTGTCCCAACAGAAATTTGGCAGGACAAGTCTTTCGAGAATAACAAGCTGCAA 720
Query 742 GTTGATCTCAGAAACAACAACTTCTCTGATGCCACAGGAAACCTGAGAACACCAGACAAT 801
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 GTTGATCTCAGGAACAACAACTTCTCTGATGCCACAGGAAACCTGAGAACACCAGACAAT 780
Query 802 AATGTCAAAGTATCCCCAGGAATCTGCTTGTGTACAGCACCTCTTTCGATTGATTATAGG 861
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 781 AATGTGAAAGTATCCCCAGGAATCTGCTTGTGCACAGCACCTCTTTCGATTGATTATAGG 840
Query 862 CTAAAGAGCCCTAGCTTCTTTTTCTTCACTCCATATATTGAACGCCAATTCAGGGAGTAT 921
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 841 CTAAAGAGCCCTAGCTTCTTTTTCTTTACTCCATATATTGAACGCCAATTCAGGGAGTAT 900
Query 922 ATTACCTCGTCCCTCCAATTGGAGACTCATCAACTAGCAATTGATAGACTTCTTGATGAG 981
|||||||||||||||||| ||||||||||||||||||| |||||||||||| | ||||||
Sbjct 901 ATTACCTCGTCCCTCCAACTGGAGACTCATCAACTAGCGATTGATAGACTTGTCGATGAG 960
Query 982 AACAGGCTGCGTCCAAGGATGTACCTAAAGCTAGTCCCCAAAGGCAAAATAACATTTAAC 1041
||||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||
Sbjct 961 AACAGGCTGCGTCCAAGAATGTACTTAAAGCTAGTCCCCAAAGGCAGAATAACATTTAAC 1020
Query 1042 AAGAGTGAAGTCATACGTAT-CAGGGACAGGTTTATGTCATGGAGTTTTAATAAAACTGA 1100
|||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1021 AAGAGTGAAGTCATACGTATAC-GGGACAGGTTTATGTCATGGAGTTTTAATAAAACTGA 1079
Query 1101 CTTTTTTGGACCCTATGAACTGCTGGACTTCCCTCTTCAAGGACCGTATGGCTCTATTGT 1160
|||||||||||| ||||| |||||||||||||||||||||||||||||||||||| | ||
Sbjct 1080 CTTTTTTGGACCATATGAGCTGCTGGACTTCCCTCTTCAAGGACCGTATGGCTCTGTCGT 1139
Query 1161 CACTGCCACTGTTATT-TCAGTGAGTGCAACACTTCTATATGTTAGGAAACGTCGTGACA 1219
| ||||||||||| || ||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 1140 CGCTGCCACTGTT-TTATCAGTGACTGCAACACTTCTATATGTTAGGAAACGTCGTGA-A 1197
Query 1220 AA-TCCCATACACTCACCAAAAAGCGTTTTTTCAGAGCAATATCTCGGGAAATTAAAGGG 1278
|| || ||||| ||||||||||| ||| |||||||| |||||||||||||||| ||||||
Sbjct 1198 AACTCACATACGCTCACCAAAAAACGTGTTTTCAGAACAATATCTCGGGAAATCAAAGGG 1257
Query 1279 GTGAAGAAGTTCAGTTTTGTAGAACTGTCGGATGCAACTAATGGTTTTGATAGCTCCACA 1338
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1258 GTGAAGAAGTTCAGTTTTGTAGAACTGTCGGATGCAACTAATGGTTTTGACAGCTCCACA 1317
Query 1339 ATGATCGGTAGAGGTAGCTATGGAAAGGTCTACAAAGGCATTTTGCCAAATAAAACTGAA 1398
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1318 CTGATTGGTAGAGGTAGCTATGGAAAGGTCTACAAAGGCATTTTGTCAAATAAAACCGAA 1377
Query 1399 GTTGCCATCAAACGAGGAGAAGAAACTTCTCTGCAGAGCGAGAAAGAGTTTCTGAATGAG 1458
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1378 GTTGCCATCAAACGAGGAGAAGAAACTTCTCTGCAGAGCGAAAAAGAGTTTCTGAATGAG 1437
Query 1459 ATCGATCTGCTTTCGAGGTTACATCACCGAAATCTTGTGTCGCTTATTGGCTACAGTAGT 1518
|||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1438 ATCGATCTACTTTCGAGGTTACATCACCGGAATCTTGTGTCGCTTATTGGCTACAGTAGT 1497
Query 1519 GATATCGGGGAACAGATGCTGGTATATGAGTATATGCCTAATGGCAATGTGCGTGATTGG 1578
|| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1498 GACATCGGGGAACAGATGCTGGTATATGAGTATATGCCTAATGGAAATGTGCGTGATTGG 1557
Query 1579 CTTTCAGTGGTTTTACATTGTCATGCAGCTAATGCTACAGACACATTGAGCTTTAGTATG 1638
||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| |||
Sbjct 1558 CTTTCAGTGGTTTTACATTGTCACGCAGCTAATGCTGCAGACACATTGAGCTTTAGCATG 1617
Query 1639 AGGTCACATGTGGCGTTGGGTTCAGCTAAAGGGATTCTTTACCTTCACACTGAAGCAAAT 1698
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1618 AGGTCACATGTGGCGTTAGGTTCAGCTAAAGGGATTCTTTACCTTCACACTGAAGCAAAT 1677
Query 1699 CCGCCTGTTATTCACCGCGATATCAAAACCAGCAACATACTCTTGGACTGTCAGCTTCGT 1758
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1678 CCGCCAGTTATTCACCGCGATATCAAAACCAGCAACATACTCTTGGACTGTCAGCTTCAT 1737
Query 1759 GCTAAAGTTGCTGATTTTGGACTGTCACGGTTGGCTCCTGCTTTTGGGGAGGGAGATGGT 1818
||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1738 GCTAAGGTTGCTGATTTTGGATTGTCACGGTTGGCTCCTGCTTTTGGGGAGGGAGATGGT 1797
Query 1819 GAGCCTGCCCATGTATCAACCGTAGTAAGAGGAACACCGGGATATCTGGATCCAGAATAC 1878
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 1798 GAGCCCGCCCATGTATCAACAGTAGTAAGAGGAACACCGGGATATCTGGATCCAGAGTAT 1857
Query 1879 TTCATGACTCAGCAATTGACGGTGAAGA-GCGATGTGTACAGCTTCGGAGTAGTATTGCT 1937
||||||||||||||||||||||||| || | |||||||||||||| |||||||| |||||
Sbjct 1858 TTCATGACTCAGCAATTGACGGTGA-GAAGTGATGTGTACAGCTTTGGAGTAGTGTTGCT 1916
Query 1938 TGAGCTTTTGACTGGAATGCACCCATTCTTTGAGGGTACACATATTATCCGCGAGGTACA 1997
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 TGAGCTTTTGACTGGAATGCACCCATTCTTTGAGGGTACACATATTATCCGCGAGGTACT 1976
Query 1998 TTTCTTGACTGAGCTCCCACGTAAACCTGATAATGGAGT-G--A-----G-GACG---GC 2045
||||||||||||||||||||||| | ||||||||||||| | | | || | ||
Sbjct 1977 TTTCTTGACTGAGCTCCCACGTAGATCTGATAATGGAGTAGCTAAATCTGTGAGGACCGC 2036
Query 2046 GAATGAATGTGGAACGGTTTTGTCAGTGGCGGATAGTCGGATGGGACAATGTTCGCCCGA 2105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2037 GAATGAATGTGGAACGGTTTTGTCAGTGGCGGATAGTCGGATGGGACAATGTTCGCCCGA 2096
Query 2106 TAAAGTGAAGAAGTTGGCGGAATTAGCGTTATGGTGTTGTGAGGATAGACCAGAGACGAG 2165
||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||
Sbjct 2097 TAAAGTGAAGAAGTTGGCGGAATTAGCTTTATGGTGTTGTGAAGATAGACCAGAGACGAG 2156
Query 2166 ACCACCAATGTCAAAAGTGGTGAAGGAACTTGAAGGTATTTGCCAATCTGTGCGAGAACC 2225
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2157 ACCACCAATGTCAAAAGTGGTGAAAGAACTTGAAGGTATTTGCCAATCTGTGCGAGAACC 2216
Query 2226 CGAAATGTTCTCAGAAACAACGAAATTGCTCTGCACCAAAACATCGCCGTCATCTTCTTC 2285
||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 2217 CGAAATGTTCTCAGAAACAACGAAATTACTCTGCTCCAAAACATCGCCGTCATCTTCTTC 2276
Query 2286 CGTACCCTCGCCATTGTCTTTACTTCCTGGAAGTGACTTGGACAGTGGCTTTTTCCACGC 2345
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 2277 TGTACCCTCGCCATTGTCTTTACTTCCTGGAAGTAACTTGGACAGTGGCTTTTTCCACGC 2336
Query 2346 TGTAAAACCTCGTTGA 2361
||||||||||||||||
Sbjct 2337 TGTAAAACCTCGTTGA 2352
> AT4G20270.1 | Symbols: BAM3 | Leucine-rich receptor-like protein
kinase family protein | chr4:10949661-10953083 FORWARD LENGTH=3299
Length=3299
Score = 58.4 bits (31), Expect = 3e-07
Identities = 42/47 (89%), Gaps = 2/47 (4%)
Strand=Plus/Plus
Query 1885 ACTCAGCAATTGACGGTGAAGAGCGATGTGTACAGCTTCGGAGTAGT 1931
||| || ||| ||| | ||||||||||||||||||||||||||||||
Sbjct 2825 ACTGAG-AATAGAC-GAGAAGAGCGATGTGTACAGCTTCGGAGTAGT 2869
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 118222283475
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5