BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938272

Length=553
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G34380.1 | Symbols:  | Putative adipose-regulatory protein (...   370    8e-102


> AT2G34380.1 | Symbols:  | Putative adipose-regulatory protein 
(Seipin) | chr2:14512707-14514516 FORWARD LENGTH=1810
Length=1810

 Score =  370 bits (200),  Expect = 8e-102
 Identities = 307/355 (86%), Gaps = 22/355 (6%)
 Strand=Plus/Plus

Query  80   CCATTACGACAGCCTCAATTCGTCTCCAACCACGAATCTCCGTAGCCGAAGGTTAG-CTA  138
            ||| |||||| ||||||||||||||||  || ||||||||||| |||||||||| | |||
Sbjct  163  CCACTACGACTGCCTCAATTCGTCTCCCCCCGCGAATCTCCGTCGCCGAAGGTT-GCCTA  221

Query  139  TCGATACGGATTCGTCTTCTTCCTCTTCTA---CTACATTGGAATCTTTTGAGAAATGGA  195
            | ||||||||||| ||||||||||||||||   || |||||||||||| ||||||| |||
Sbjct  222  TGGATACGGATTCTTCTTCTTCCTCTTCTACGTCTTCATTGGAATCTTGTGAGAAACGGA  281

Query  196  GCTCCGTGGGAGAAAATGACGAGCTTGAGGTTTTTATAA-GGAATTTCGAAATAATTGAG  254
            || |||||||||||||||||||||||||||||| | ||  ||| |||||||| |||||| 
Sbjct  282  GCACCGTGGGAGAAAATGACGAGCTTGAGGTTTCTCTAGTGGA-TTTCGAAACAATTGA-  339

Query  255  AAT-GATGTCGATGTTACTGACTCTGCAGATAGCTCAATCGTCCCAATT-CAGGAAAAAG  312
            ||| |||||||||||||||||||||||| |||||||||||| | | ||| | ||||||||
Sbjct  340  AATTGATGTCGATGTTACTGACTCTGCAAATAGCTCAATCGACTCGATTTC-GGAAAAAG  398

Query  313  GGGAAGACTTTGAAGTTAT-GACTC-T-TAC-G----G-AGAAGAATATGGATGTGAATG  363
            | |||||||||||||| || ||||| | ||| |    | |||||||||||| || |||||
Sbjct  399  GAGAAGACTTTGAAGTAATTGACTCGTGTACCGATACGGAGAAGAATATGGGTGAGAATG  458

Query  364  ATTCGGGTCGGG-CTGACCCGTTTACAGCAACCACCTTGAATGATGAGCGAGGTG  417
            |||||||||||| | |||||||||||||  |||||||||||||||||||||||||
Sbjct  459  ATTCGGGTCGGGTC-GACCCGTTTACAGTGACCACCTTGAATGATGAGCGAGGTG  512



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26523629616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5