BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938278
Length=1009
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3... 1465 0.0
AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conj... 521 4e-147
> AT3G53690.1 | Symbols: | RING/U-box superfamily protein | chr3:19898788-19900065
REVERSE LENGTH=1193
Length=1193
Score = 1465 bits (793), Expect = 0.0
Identities = 944/1015 (93%), Gaps = 17/1015 (2%)
Strand=Plus/Plus
Query 1 CTAATTGGAATCA-TTTTGAAATGGCGACACAGTCTGTTAACGCGGTGATCGTTGATCTT 59
|||||| |||||| ||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1 CTAATTAGAATCATTTTTGAAATGGCGACACAGTCAGTTAACGCAGTGATCGTTGATCTT 60
Query 60 CCCGGAGATGTAAACGACGACGGCGATAATTCCGATTGTTTCATCTTCTCCTC-CACTCC 118
||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||
Sbjct 61 CCCGGAGATGTAAACGACGACGGCGATAATTCCGATTGTTTCATCTTCTCCACTC-CTCC 119
Query 119 TCTATCTGCTCGTGGTTCCACCAAGCGTGACGCTATTTCCGTTGAGAATTACGATCGTGA 178
||| ||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 120 TCTCTCTGCACGTGGTTCCACAAAGCGTGATGCTATTTCCGTTGAGAATTACGATCGTGA 179
Query 179 TCGCAAACTTCAACGTCTCTGGGTCTACCCTCCTCACAACAGAGCAATCAAATCAGAATC 238
||| ||||||||||||||||||||||||||||||||||| | | |||||| ||||||||
Sbjct 180 TCGGAAACTTCAACGTCTCTGGGTCTACCCTCCTCACAAAACCGTAATCAAGTCAGAATC 239
Query 239 TCCAATTTACATAGATCTTGATCTTTACGATGATGAAGACGATGATATCAGAATCCTCTG 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 240 TCCAATTTACATAGATCTTGATCTTTACGATGATGAAGACGATGATATCAGAATCCTCTG 299
Query 299 TTTCCCACCACCAATCCACACCAAATCTTTAGAAAAGGGTCAGTCTTCTTCGTCAGCGAC 358
|||| |||||||||| | || | | ||||||||||||||||||||||||| |||
Sbjct 300 TTTCGCACCACCAAT-C-CA-C--A----GAGAAAAGGGTCAGTCTTCTTCGTCAAAGAC 350
Query 359 GGTTACTTTCGACTGTGAGATATGTGTTGAAACAAAATCCATAATTGAATCGTTTCGTAT 418
|| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 351 GGCGACTTTCGACTGTGAGATATGTGTTGATTCAAAATCCATAATTGAGTCGTTTCGTAT 410
Query 419 CGGTGGATGCTCTCACTTCTACTGCAACGATTGTGTCTCGAAATATATAGCAGCTAAATT 478
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 411 CGGTGGATGCTCTCACTTCTACTGCAACGACTGTGTTTCGAAATATATAGCAGCTAAATT 470
Query 479 ACAAGACAACATTCTCTCGATCGAGTGTCCTGTCTCTGGTTGCTCTGGTCGGCTCGAGCC 538
|||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||
Sbjct 471 ACAAGACAACATTCTCTCAATCGAATGTCCTGTCTCTGGTTGTTCTGGTCGGCTCGAGCC 530
Query 539 TGATCAGTGTCGTCAAATCTTGCC-AAGGGAGGTTTTTGATCGGTGGGGTGATGCTTTGT 597
|||||||||||||| || ||||| || |||||||||||||||||||||||||||||||
Sbjct 531 AGATCAGTGTCGTCAGATTTTGCCTAA-AGAGGTTTTTGATCGGTGGGGTGATGCTTTGT 589
Query 598 GTGAAGCAGTAGTGATGCGTTCGAAGAGATTCTACTGTCCTTACAAGGATTGCTCTGCTT 657
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 590 GTGAAGCAGTAGTGATGCGTTCGAAGAAATTCTACTGTCCTTACAAGGATTGCTCTGCTT 649
Query 658 TGCTTTTCATGGACGAGAGTGAAGT---GATGAAAGACTCAGAGTGTCCTCATTGCCATA 714
|| ||||| | || ||||||||||| ||||||||| || |||||||||||||| ||||
Sbjct 650 TGGTTTTCTTAGAAGAGAGTGAAGTAAAGATGAAAGATTCGGAGTGTCCTCATTGTCATA 709
Query 715 GAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATGACTTGTGAGGAGTTTC 774
||||||||||||| |||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 710 GAATGGTGTGTGTGGAGTGTGGGACTCAGTGGCATCCGGAGATGACTTGCGAGGAGTTTC 769
Query 775 AGAATCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAGA 834
|||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 770 AGAAGCTAGCGGCGAACGAGAGAGGAAGAGATGATATTTTGCTTGCGACGATGGCAAAGC 829
Query 835 AAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAGTCTCATGGTTGCT 894
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 830 AAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAATCTCAGGGTTGCT 889
Query 895 TATACATGAAGTGCAGGTGTGGGTTGGCTTTTTGCTACAACTGTGGAACGCCATCCAGGG 954
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 890 TATACATGAAGTGCAGGTGTGGGTTGGCTTTTTGCTACAACTGTGGAACTCCATCGAGGG 949
Query 955 ACCATTCTCATTATTGTTATAATTGTAAGCGTTGATGTTTAGCATCAGTATTTCT 1009
||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 950 ACCATACTCATTATTGTTATAATTGTAAGCGTTGATATTTAGCATCAGCATTTCT 1004
> AT2G26455.1 | Symbols: | pseudogene, similar to Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse), contains a Prosite:PS00518:
Zinc finger, C3HC4 type (RING finger), signature
and Pfam:PF01485 IBR domain; blastp match of 25% identity
and 5.7e-18 P-value to SP|Q925F3|U7I4_MOUSE Ubiquitin conjugating
enzyme 7 interacting protein 4 (UbcM4- interacting
protein 4) (RING finger protein 144). (Mouse) {Mus musculus}
| chr2:11253700-11254930 REVERSE LENGTH=1231
Length=1231
Score = 521 bits (282), Expect = 4e-147
Identities = 473/563 (84%), Gaps = 22/563 (4%)
Strand=Plus/Plus
Query 364 CTTTCGACTGTGAGATATGTGTTGAAAC-AAAATCC-ATAATTGAATCGTTTCGTATCGG 421
|||||||||| ||||||||||||| ||| |||| || | |||||||| ||||| |||
Sbjct 455 CTTTCGACTGCGAGATATGTGTTG-AACGAAAA-CCAAGGATTGAATCTTTTCGAATCAA 512
Query 422 TGGATGCTCTCACTTC-TACTGCAACGATTGTGTCTCGAAATATATAGCAGCTAAATTAC 480
||| || |||||| | || ||||||||||||||||| ||||||||||| ||||| ||||
Sbjct 513 TGGCTGTTCTCAC-ACTTATTGCAACGATTGTGTCTCAAAATATATAGCTGCTAAGTTAC 571
Query 481 AAGACAACATTCTCTCGATCGAGTGTCCTGTCTCTGGTTGCTCTGGTCGGCTCGAGCCTG 540
|||||||||||||||| ||| | || ||||| ||||||||||| || | ||||||||| |
Sbjct 572 AAGACAACATTCTCTCAATCAAATGCCCTGTTTCTGGTTGCTCGGGGCAGCTCGAGCCCG 631
Query 541 ATCAGTGTC-GTCAAATCTTGCCAAGGGAGGTTTTTGATCGGTGGGGTGATGCT-TTGTG 598
|| | || | |||||||| ||||||| || || |||||||||||||| || ||| || ||
Sbjct 632 ATAAATG-CGGTCAAATCCTGCCAAGAGAAGTCTTTGATCGGTGGGGAGACGCTCTT-TG 689
Query 599 TGAAGCAGTAG-TGATGCGTTCGAAGAGATTCTACTGTCCTTACAAGGATTGCTCTGCTT 657
|| || || | | ||| |||| ||||||||||| |||||||| ||||||||||||||||
Sbjct 690 CGAGGCGGT-GATTATGAGTTCAAAGAGATTCTATTGTCCTTATAAGGATTGCTCTGCTT 748
Query 658 TGCTTTTCATGGACGAGAGT---G-A-AG-TGATGAAAG-ACTCAGAGTGTCCTCATTGC 710
|||| ||| ||||||||||| | | || |||||| | | || |||||||||||||||
Sbjct 749 TGCTCTTCTTGGACGAGAGTGAAGAAGAGAAGATGAATGTA-TCGGAGTGTCCTCATTGC 807
Query 711 CATAGAATGGTGTGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATGACTTGTGAGGAG 770
|||||||||||| |||||||||||||||||||||||||||||||||| || || ||||||
Sbjct 808 CATAGAATGGTGAGTGTAGAGTGTGGGACTAAGTGGCATCCGGAGATAACATGCGAGGAG 867
Query 771 TTTCAGAATCTAGCGGAGAACGAAAGAGGAAGAGATGATATTTTGCTTGC-GACGATGGC 829
||||| || ||||| ||||||||||||| ||||| ||||| ||| ||| || |||||
Sbjct 868 TTTCAAAAGCTAGCCGAGAACGAAAGAGAAAGAGGGGATATATTG-TTGAAGAATATGGC 926
Query 830 AAAGAAAAAGAAATGGAAAAGATGTCCTTCTTGCAAATTCTATATTGAGAAGTCTCATGG 889
| ||| ||||| |||| |||||||||||||||||||||||| ||||| || ||| | ||
Sbjct 927 AGAGAGTAAGAAGTGGAGAAGATGTCCTTCTTGCAAATTCTACATTGAAAAATCTGAGGG 986
Query 890 TTGCTTATACATGAAGTGCAGGT 912
|||||||||||||||||||||||
Sbjct 987 TTGCTTATACATGAAGTGCAGGT 1009
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49430400648
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5