BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938281
Length=2572
Score E
Sequences producing significant alignments: (Bits) Value
AT3G53720.1 | Symbols: ATCHX20, CHX20 | cation/H+ exchanger 20 ... 4080 0.0
> AT3G53720.1 | Symbols: ATCHX20, CHX20 | cation/H+ exchanger 20
| chr3:19905678-19910112 REVERSE LENGTH=2762
Length=2762
Score = 4080 bits (2209), Expect = 0.0
Identities = 2457/2578 (95%), Gaps = 11/2578 (0%)
Strand=Plus/Plus
Query 1 GAGTCC-TTGAAATCCCCAAAATGCCCTTCAACATAACCTCTGTGAAAACCTCGTCTAAC 59
|||||| |||||||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 65 GAGTCCTTTGAAATCCCCAAAATGCCCTTCAACATAACCTCCGTGAAAACCTCATCTAAC 124
Query 60 GGAGTATGGCAAGGCGACAATCCCTTAAACTTCGCTTTTCCGTTACTCATCGTCCAAACA 119
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 125 GGAGTATGGCAAGGCGACAATCCTTTAAACTTCGCTTTTCCGTTACTCATCGTCCAAACG 184
Query 120 GCGTTAATCATCGCCGTCAGTCGCTCCCTCGCCGTCTTATTCAAACCTCTCCGTCAACCT 179
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 185 GCGTTAATCATCGCCGTCAGTCGCTTCCTCGCCGTCTTATTCAAACCTCTCCGTCAACCC 244
Query 180 AAAGTCATCGCCGAGATTGTCGGAGGGATTTTGTTAGGACCATCGGCTTTAGGTAGAAAC 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 245 AAAGTCATCGCCGAGATTGTCGGAGGGATTTTGTTAGGACCATCGGCTTTAGGTAGAAAC 304
Query 240 ACGGCGTATATGGACCGTATATTCCCGAAATGGAGTATGCCGATACTTGAATCCGTCGCG 299
| |||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 305 ATGGCGTACATGGACCGTATATTTCCGAAATGGAGTATGCCGATACTCGAATCCGTCGCG 364
Query 300 AGCATAGGACTTCTATTCTTCCTCTTCCTCGTCGGTCTCGAGCTCGATTTATCATCGATC 359
|||||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 365 AGCATAGGACTTCTCTTCTTCCTCTTCCTCGTCGGTCTAGAACTCGATTTATCATCGATC 424
Query 360 CGACGAAGCGGCAAACGCGCTTTTGGAATCGCAGTCGCCGGAATCACACTACCGTTTATC 419
||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||
Sbjct 425 CGACGAAGCGGCAAACGCGCTTTCGGAATCGCAGTCGCTGGAATTACACTACCGTTTATC 484
Query 420 GCCGGCGTTGGAGTCGCGTTCGTGATCCGCAACACTCTCTACACCGCCGCGGATAGACCA 479
|||||||| ||||||||||| |||||||| ||||||||||||||||||||||||| ||||
Sbjct 485 GCCGGCGTCGGAGTCGCGTTTGTGATCCGTAACACTCTCTACACCGCCGCGGATAAACCA 544
Query 480 GGATT-CGCCGAATTTCTCGTTTTCATGGGAGTCGCACTCTCGATCACAGCTTTTCCCGT 538
|| || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 545 GG-TTACGCCGAGTTTCTCGTTTTCATGGGAGTCGCACTCTCGATCACAGCTTTTCCGGT 603
Query 539 ACTCGCGCGTATTTTAGCAGAGCTCAAGCTTTTAACGACTCGGATCGGAGAAACCGCGAT 598
||| ||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||
Sbjct 604 ACTTGCGCGTATTTTAGCAGAGCTCAAGCTTTTAACGACTCAGATAGGAGAAACCGCGAT 663
Query 599 GGCTGCAGCCGCTTTCAACGATGTAGCCGCGTGGATTTTGCTCGCTTTAGCGGTTGCGTT 658
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 664 GGCTGCAGCCGCTTTTAACGATGTAGCCGCGTGGATTTTACTCGCTTTAGCGGTTGCGTT 723
Query 659 AGCGGGTGATGGCGGTGGGGGCGGTGGAGAGAAAAAGAGTCCGTTAGTGTCGTTGTGGGT 718
||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||||||
Sbjct 724 AGCGGGTAATGGCGGTGAGGGAGGTGGAGAGAAAAAGAGTCCGTTAGTGTCGTTGTGGGT 783
Query 719 TTTATTATCGGGTGCTGGGTTTGTGGTTTTTATGTTGGTTGTGATCCGACCCGGAATGAA 778
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 TTTGTTATCGGGCGCTGGGTTTGTGGTTTTTATGTTGGTTGTGATCCGACCCGGAATGAA 843
Query 779 ATGGGTCGCGAAACGTGGATCTCCTGAAAACGACGTCGTACGTGAGTCTTACGTGTGTTT 838
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 844 ATGGGTCGCGAAACGTGGATCTCCTGAAAACGACGTCGTACGCGAGTCTTACGTGTGTTT 903
Query 839 GACGTTAGCCGGAGTTATGGTTTCCGGTTTCGCGACGGATTTAATTGGGATTCATTCGAT 898
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 904 GACGTTAGCCGGTGTTATGGTTTCCGGTTTCGCGACGGATTTAATTGGGATTCATTCGAT 963
Query 899 TTTTGGAGCGTTTGTTTTCGGTTTAACTATACCGAAAGATGGAGAGTTCGGTCAGAGGTT 958
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||| | ||
Sbjct 964 TTTTGGAGCGTTTGTTTTCGGTTTGACTATACCGAAAGATGGAGAGTTTGGTCAGCGATT 1023
Query 959 AATTGAACGGATTGAGGATTTTGTCTCCGGTTTACTCTTACCGCTTTATTTCGCGACGAG 1018
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1024 GATTGAACGAATTGAGGATTTTGTTTCCGGTTTACTCTTACCGCTTTATTTCGCTACGAG 1083
Query 1019 TGGGTTAAAAACTGACGTGGCAAAGATCAGAGGAGCTGAGTCGTGGGGGATGTTGGGTCT 1078
||| || || ||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 1084 TGGTTTGAAGACTGACGTGGCTAAGATTAGAGGAGCTGAGTCGTGGGGGATGTTGGGTCT 1143
Query 1079 TGTTGTGGTAACGGCTTGCGCCGGGAAGATAGTCGGAACTTTTGTTGTGGCGGTGATGGT 1138
|||||| || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TGTTGTTGTTACGGCTTGTGCCGGGAAGATAGTCGGAACTTTTGTTGTGGCGGTGATGGT 1203
Query 1139 TAAAGTTCCGGCGAGAGAGGCTTTGACACTTGGTTTCTTGATGAATACTAAAGGTTTAGT 1198
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1204 TAAAGTTCCGGCGAGAGAGGCGTTGACACTTGGTTTCTTGATGAATACTAAAGGTTTAGT 1263
Query 1199 GGAGCTCATTGTACTCAACATAGGCAGGGAGAAAAAGGTACTAAACGACGAGACGTTTGC 1258
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1264 GGAGCTCATTGTACTCAACATAGGCAAGGAGAAAAAGGTACTAAACGACGAGACGTTTGC 1323
Query 1259 AATATTAGTGCTAATGGCACTCTTCACAACGTTCATAACGACGCCGACTGTAATGGCCAT 1318
|||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1324 AATACTAGTGCTAATGGCACTCTTCACAACGTTCATAACGACGCCTACTGTAATGGCCAT 1383
Query 1319 TTACAAGCCGGCACGTGGCACCCACCGCAAATTAAAAGACTTGTCCGCGAGCGAAGGCTC 1378
||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||| |||
Sbjct 1384 TTACAAGCCGGCACGTGGCACCCACCGCAAACTAAAAGACTTGTCGGCGAGCCAAGACTC 1443
Query 1379 CACCAAAGAAGAGCTTCGCATCCTAGCCTGCCTCCACGGCCCAGCCAATGtctcctctct 1438
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1444 CACCAAGGAAGAGCTTCGCATCCTAGCCTGCCTCCACGGCCCAGCCAATGTCTCCTCCCT 1503
Query 1439 catctctctcATCGAGTCCATCCGAACCACCAAGATACTGCAGCTAAAGCTGTTCGTGAT 1498
|||||||||| |||||||||||||||||||||||||||| | |||||||||||| |||||
Sbjct 1504 CATCTCTCTCGTCGAGTCCATCCGAACCACCAAGATACTACGGCTAAAGCTGTTTGTGAT 1563
Query 1499 GCATCTGATGGAACTAACGGAACGGTCTTCGTCAATCATAATGGTGCAAAGAGCCCGTAA 1558
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1564 GCATCTGATGGAACTAACGGAACGGTCTTCGTCAATCATAATGGTGCAAAGAGCCCGTAA 1623
Query 1559 AAACGGACTTCCTTTCGTTCACCGTTACCGTCATGGTGAGCGTCACAGCAGCGTCATAGG 1618
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1624 AAACGGACTTCCTTTCGTTCACCGTTACCGTCATGGTGAGCGTCACAGCAACGTCATAGG 1683
Query 1619 AGGCTTCGAAGCCTATCGTCAACTAGGCCGGGTCGCAGTCCGGCCCATAACCGCAGTCTC 1678
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1684 AGGCTTCGAAGCCTATCGTCAACTAGGCCGGGTCGCAGTCCGGCCCATCACCGCAGTCTC 1743
Query 1679 TCCATTACCCACAATGCACGAAGACATTTGCCACATGGCAGAGACCAAGAGGGTCACAAT 1738
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1744 TCCATTACCCACAATGCACGAAGACATTTGCCACATGGCAGATACCAAGAGGGTCACAAT 1803
Query 1739 GATCATTTTACCTTTCCACAAACGATGGAACGTTGATCATGGTCATGGCCACCATCATCA 1798
|||||||||||||||||||||||||||||||| ||||||||||||| ||||||| || ||
Sbjct 1804 GATCATTTTACCTTTCCACAAACGATGGAACGCTGATCATGGTCATAGCCACCACCACCA 1863
Query 1799 AGATGGTGGAG-AC--GGAAACTTACCAGAAAACGTTGGTCATGGTTGGCGATTGGTTAA 1855
||| || |||| | |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1864 AGACGGAGGAGGAGATGGAAACGTACCGGAAAACGTTGGTCATGGTTGGCGATTGGTTAA 1923
Query 1856 CCAGAGGGTTCTGAAGAACGCGCCGTGTTCTGTGGCGGTTCTTGTGGACCGTGGACTTGG 1915
||| |||||| ||||||| ||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1924 CCAAAGGGTTTTGAAGAATGCGCCGTGTTCGGTGGCGGTTCTTGTAGACCGTGGACTTGG 1983
Query 1916 GTCCATTGAGGCCCAAACTTCGAGCCTCGATGGGTCAAATGTGGTTGAAAGGGTTTGTGT 1975
|||||||||||||||||||| |||| | |||||||| |||||||||||||||||||||||
Sbjct 1984 GTCCATTGAGGCCCAAACTTTGAGCTTAGATGGGTCGAATGTGGTTGAAAGGGTTTGTGT 2043
Query 1976 GATTTTCTTTGGTGGGCCTGATGATCGTGAGGCTTTAGAGCTCGGCGGGAGGATGGCGGA 2035
|||||||||||||||||||||||| |||||| || |||||||||||||||| ||||| ||
Sbjct 2044 GATTTTCTTTGGTGGGCCTGATGACCGTGAGTCTATAGAGCTCGGCGGGAGAATGGCTGA 2103
Query 2036 GCATCCGGCCGTTAAAGTTACCGTTATTAGGTTCTTGGTGAGAGAAAGGTTGAGGAGTAA 2095
||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||
Sbjct 2104 GCATCCGGCCGTTAAAGTTACCGTTATTAGGTTTTTGGTAAGAGAAACGTTGAGGAGTAC 2163
Query 2096 CGTCGTTACCTTACGACCGGCACCGTCTAAAGGCAAGGAGAAGAACTATGCCTTTTTGAC 2155
|| ||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 2164 CGCCGTCACTTTACGACCGGCACCGTCTAAAGGCAAGGAGAAGAACTATGCCTTTTTAAC 2223
Query 2156 AACCAACGTGGATCCAGAAAAAGAAAAGGAATTAGACGAAGGGGCATTGGAAGACTTCAA 2215
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2224 AACCAACGTGGATCCAGAAAAAGAAAAGGAATTAGACGAAGGGGCATTGGAAGACTTCAA 2283
Query 2216 GGGCAAATGGAAAGAAATGGTGGAGTACAAAGAAAAGGAACCAAACAACATCATTGAAGA 2275
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2284 GAGCAAATGGAAAGAAATGGTGGAGTACAAAGAAAAGGAACCAAACAACATCATTGAAGA 2343
Query 2276 GATACTGTCAATAGGACAAAGTAAAGACTTTGATCTAATTGTGGTTGGAAGGGGGAGGAT 2335
||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 2344 AATACTGTCAATAGGACAGAGTAAAGACTTTGATCTAATAGTGGTTGGAAGAGGGAGGAT 2403
Query 2336 ACCGTCGGCTGAGGTTGCGGCATTAGCTGAGCGTCA-GACTGAACATCCCGAGTTAGGTC 2394
||||||||| ||||| |||||||||||||||||||| | |||||||||| ||||||||||
Sbjct 2404 ACCGTCGGCCGAGGTGGCGGCATTAGCTGAGCGTCAAG-CTGAACATCCTGAGTTAGGTC 2462
Query 2395 CTATAGGGGACGTGCTCGCCTCTTCGATCAACCACATCATCCCATCAATCCTTGTGGTTC 2454
|||| || |||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2463 CTATCGGAGACGTGCTCGCCTCTTCGATCAACCACATCATTCCATCAATCCTTGTGGTTC 2522
Query 2455 AACAACACAACAAAGCTCATGTAGAGGATATTACGGTTTCCAAAATTGTTAGTGAGTCTT 2514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2523 AACAACACAACAAAGCTCATGTAGAGGATATTACGGTTTCCAAAATTGTTAGTGAGTCTT 2582
Query 2515 CTCTAAGTATTATTAACGGAGACACAAATGTATGATAACAATAAATAAATTGATGTAG 2572
|||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 2583 CTCTAAGTATTA--A-CGGAGACACAAATGTATGATAACAATAAATAAATTGATCTAG 2637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127674869935
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5