BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938283

Length=400
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G75820.1 | Symbols: CLV1, FAS3, FLO5, ATCLV1 | Leucine-rich ...   335    2e-91


> AT1G75820.1 | Symbols: CLV1, FAS3, FLO5, ATCLV1 | Leucine-rich 
receptor-like protein kinase family protein | chr1:28463462-28466971 
REVERSE LENGTH=3431
Length=3431

 Score =  335 bits (181),  Expect = 2e-91
 Identities = 206/218 (94%), Gaps = 2/218 (1%)
 Strand=Plus/Plus

Query  1     CCGGTGAACTTCCGACAACGATGTCCGGCGATGTTCTCGATCAGATTTACCTCTCAAACA  60
             ||||||||||||||  ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct  1656  CCGGTGAACTTCCGGTAACGATGTCCGGCGATGTTCTCGATCAGATTTACCTCTCTAACA  1715

Query  61    ACTGGTTTTCCGGCGAGATTCCACCTGCGATCGGTAATTTCCCCAATTTACAGACTCTGT  120
             ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||| |
Sbjct  1716  ACTGGTTTTCCGGCGAGATTCCACCTGCGATTGGTAATTTCCCCAATCTACAGACTCTAT  1775

Query  121   TCTTAGATCGGAACCGATTTCGCGGGAAT-TTACCGAGGGAAATCTTCGAATTGAAGCAT  179
             ||||||||||||||||||||||||| ||  || ||||| |||||||||||||||||||||
Sbjct  1776  TCTTAGATCGGAACCGATTTCGCGGCAACATT-CCGAGAGAAATCTTCGAATTGAAGCAT  1834

Query  180   TTATCGAAGATCAACACAAGTGCGAACAACATCACCGG  217
             ||||||| ||||||||||||||||||||||||||||||
Sbjct  1835  TTATCGAGGATCAACACAAGTGCGAACAACATCACCGG  1872


 Score =  174 bits (94),  Expect = 5e-43
 Identities = 109/116 (94%), Gaps = 2/116 (2%)
 Strand=Plus/Plus

Query  213   ACCGGTTCAATCCCTACCAGAATCGGAAACATGACGAGTTTAACAACTCTCTATCTCTCT  272
             |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct  2012  ACCGGTTCAATCCCTACCGGAATCGGAAACATGACGAGTTTAACAACTCTCGATCTCTCT  2071

Query  273   TTCAAAGATCTCTCCGGAAGAGTACCACTCGGTGGTCAATTCATGGT-TTCA-CGA  326
             ||||| ||||||||||| |||||||||||||||||||||||| |||| |||| |||
Sbjct  2072  TTCAACGATCTCTCCGGTAGAGTACCACTCGGTGGTCAATTCTTGGTGTTCAACGA  2127



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18900673624


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5