BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938293

Length=473
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G53820.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamil...   671    0.0  


> AT3G53820.1 | Symbols:  | C2H2 and C2HC zinc fingers superfamily 
protein | chr3:19938706-19939134 FORWARD LENGTH=429
Length=429

 Score =  671 bits (363),  Expect = 0.0
 Identities = 409/431 (95%), Gaps = 4/431 (1%)
 Strand=Plus/Plus

Query  25   ATGAATAGAAAATACTTGGATCGTCGATCATATTCATGGTCCGGATCGCAAGCAAGACCA  84
            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct  1    ATGAATAGAAAATACTTGGATCGTCGATCATATTCATGGTCCGGATCACAAGCAAGACCA  60

Query  85   TACATATGCGAATTTTGCGAGAGAGGTTTTTCCAACGCACAAGCTTTAGGAGGGCACATG  144
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   TACATATGCGAATTTTGCGAGAGAGGTTTTTCCAACGCACAAGCTTTAGGAGGGCACATG  120

Query  145  AACATCCACAGAAAAGACAGGGCAAAACTTCGACAAGCGAACCTAAAAGAAGAAGATAGT  204
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct  121  AACATCCACAGAAAAGACAGGGCAAAACTTCGACAAGCGAACCTAAAAGAAGAAGACAGT  180

Query  205  GAAGAAGCCATTTGCACCACTTCGAGAAATCGGTTCGAGCAAGAGCTTATTGAGTTACCT  264
            ||||| ||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct  181  GAAGATGCCATTTGCACCACTTCGAGAAATCGGTTTGGGCAAGAGCTTATTGAGTTACCT  240

Query  265  TTCTTCGTTGATACGGTCGGTCCaaggagaaaagaagaagatgatagaagc-aaaaactg  323
            |||||||||||||||||||||||||| ||||||| ||||||||||| |||| |||||  |
Sbjct  241  TTCTTCGTTGATACGGTCGGTCCAAGAAGAAAAGGAGAAGATGATAAAAGCGAAAAAG-G  299

Query  324  ttcaggagatgaagaagagaagaaa-aTGAGGATACTTCAAAACGCTTTATCTCAAAGTG  382
            || ||||||||||||| |||| ||| ||||||||||||||||| ||||||||||||||||
Sbjct  300  TTTAGGAGATGAAGAAAAGAA-AAATATGAGGATACTTCAAAAGGCTTTATCTCAAAGTG  358

Query  383  CAGAAGTGATAGATCTTGAGCTCCGTCTGGGATTAGATCCTTACAGGAAATCAACAAGTA  442
            |||| ||||||||||||||||||||||| |||||||||||||| |  ||| |||||||||
Sbjct  359  CAGACGTGATAGATCTTGAGCTCCGTCTAGGATTAGATCCTTATAAAAAAACAACAAGTA  418

Query  443  CAAGTACGTAA  453
            |||||||||||
Sbjct  419  CAAGTACGTAA  429



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22504897856


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5