BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938312
Length=1958
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54010.1 | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl c... 2723 0.0
> AT3G54010.1 | Symbols: PAS1, DEI1 | FKBP-type peptidyl-prolyl
cis-trans isomerase family protein | chr3:20000861-20005183
FORWARD LENGTH=2209
Length=2209
Score = 2723 bits (1474), Expect = 0.0
Identities = 1568/1615 (97%), Gaps = 0/1615 (0%)
Strand=Plus/Plus
Query 2 ACTCTGGAATTGATCGGCGATGGCGGTGGGCGATCAGACAGAGCAGACTTACTTACCGAA 61
|||||||| |||||||||||||||||| ||||||||||| ||||||| |||||| |||||
Sbjct 163 ACTCTGGATTTGATCGGCGATGGCGGTAGGCGATCAGACGGAGCAGAATTACTTGCCGAA 222
Query 62 GAAGAAGAAATCCGAAACGGAAGACGATAAGAGGAGGAAGAAAATTGTTCCTGGGAGCTT 121
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 223 GAAGAAGAAATCCGAAACGGAAGATGATAAGAGGAGGAAGAAAATTGTTCCCGGGAGCTT 282
Query 122 GTTGAAAGCTGTGGTGAGACCTGGAGGAGGTGATTCGAGCCCTGTTGATGGTGATCAGGT 181
|||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 283 GTTGAAAGCTGTGGTGCGACCTGGAGGAGGTGATTCGAGCCCCGTTGATGGTGATCAGGT 342
Query 182 TATTTATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATCTACGAGGTCAGA 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 TATTTATCACTGCACTGTACGGACACTGGATGGTGTAGTTGTGGAATCTACGAGGTCAGA 402
Query 242 ATGTGGAGGGAGAGGTTTACCGATAAGAGATGTCCTGGGGAAGAGTAAAATGATCCTTGG 301
|| ||||||||||||| ||||||| ||||||||| |||| || || |||||||| |||||
Sbjct 403 ATCTGGAGGGAGAGGTGTACCGATCAGAGATGTCTTGGGAAACAGCAAAATGATTCTTGG 462
Query 302 ATTGCTCGAAGGTATTCCCACGATGCACAAGGGTGAAATTGCAATGTTCAAGATGAAACC 361
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 463 ATTGCTCGAAGGAATTCCCACGATGCACAAGGGTGAAATTGCAATGTTCAAGATGAAACC 522
Query 362 TGAAATGCATTATGCAGAGAATGATTGTCCTGTTTCAGCTCCAGGCAATTTTCCAAAAGA 421
||||||||| |||||||||| ||||||||| || |||||||||| ||||||||||||||
Sbjct 523 TGAAATGCACTATGCAGAGATTGATTGTCCAGTCTCAGCTCCAGAAAATTTTCCAAAAGA 582
Query 422 TGACGAGCTTCATTTTGAGGTTGAGTTGTTGGATATTTCTAAAGCCAAGATTGCAAGTGA 481
||| ||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 583 TGATGAGCTTCATTTTGAGATTGAGTTGTTGGATTTTTCTAAAGCCAAGATTGCAAGTGA 642
Query 482 TGATCTGGGGGTCATCAAGAAGATTCTAAATGAAGGTGAGGGCTGGGAATCTCCCAGAGA 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 643 TGATCTGGGGGTCATCAAGAAGATTCTAAATGAAGGTGAGGGCTGGGAATCTCCCAGAGA 702
Query 542 ACCCTATGAAGTAAAAGCTAGAATATCTGCTAAATCCGGTGATGGACAAGTGATCTTCTC 601
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 703 ACCCTATGAAGTGAAAGCCAGAATATCTGCTAAATCCGGTGATGGACACGTGATCTTCTC 762
Query 602 TTATGCAGAAGAACCTTATTTCTTCACATTTGGAAAATCTGAGGTGCCTAAAGGTCTTGA 661
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TCACACAGAAGAACCTTATTTCTTCACATTTGGAAAATCTGAGGTGCCTAAAGGTCTTGA 822
Query 662 AATCGGAATTGGAACCATGGCTCGGAAGGAGAAGGCAGTGATATATGTTCGCAAGCAGTA 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AATCGGAATTGGAACCATGGCTCGGAAGGAGAAGGCAGTGATATATGTTCGCAAGCAGTA 882
Query 722 CTTGACTGAATCTCCTTTGTTGCATATAGATCAGGACCTTGAGGAAGTTCATTTTGAGGT 781
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 883 CTTGACTGAATCTCCTTTGTTGCATATAGATCAAGACCTTGAGGAAGTTCATTTTGAGGT 942
Query 782 TGAACTGGTACATTTCATTCAGGTGCGGGACATGCTTGGAGATGGACGTCTCATAAAACG 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 943 TGAACTGGTACATTTCATTCAGGTGCGGGACATGCTTGGAGATGGACGTCTCATAAAACG 1002
Query 842 TCGAGTTCGAGATGGAAGAGGCGAGTTTCCAATGGATTGTCCTCTCCAAGATAGTCGGTT 901
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1003 TCGAATTCGAGATGGAAGAGGCGAGTTTCCAATGGATTGTCCTCTCCAAGATAGTCGTTT 1062
Query 902 AAGCGTTCACTACAAGGGCATGCTTCTCAATGAAGAGAAAACTGTCTTCTATGATAGCAA 961
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1063 AAGCGTTCACTACAAGGGCATGCTTCTCAATGAAGAGAAGACTGTCTTCTATGATAGCAA 1122
Query 962 GATTGACAATAATGATCAACCGTTGGAGTTCAGTTCAGGAGAAGGACTGGTCCCTGAGGG 1021
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1123 GATTGACAATAATGATCAACCGTTGGAGTTCAGTTCAGGAGAAGGACTGGTCCCTGAAGG 1182
Query 1022 GTTTGAGATGTGTACTCGTTTGATGCTACCTGGGGAGATTGCTCTTGTTACATGCCCCCC 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1183 GTTTGAGATGTGTACTCGTTTGATGCTACCTGGGGAGATTGCTCTTGTTACATGCCCCCC 1242
Query 1082 TGATTATGCATATGACAAATTTCCGAGACCACCTGGCGTGTCTGAAGGTGCACATGTTCA 1141
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1243 TGATTATGCATATGACAAATTTCCGAGACCACCTGGCGTGTCTGAAGGTGCACATGTTCA 1302
Query 1142 GTGGGAGATTGAACTCCTTGGTTTTGAAACGCCAAGGGACTGGACTGGCTTGAACTTCCA 1201
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1303 GTGGGAGATTGAACTCCTTGGTTTCGAAACGCCAAGAGACTGGACTGGCTTGAACTTCCA 1362
Query 1202 GAGCATCATGGACGAGGCAGATAAAATCAGAAGCACGGGTAACAGGCTTTTCAAAGAAGG 1261
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1363 GAGCATCATGGACGAGGCAGATAAAATCAGAAGCACGGGTAATAGGCTTTTCAAAGAAGG 1422
Query 1262 AAAATTTGAGCTCGCAAAAGCAAAGTACGAAAAGGTGCTCCGGGAATTTAATCATGTCAA 1321
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1423 AAAATTTGAGCTCGCAAAAGCAAAGTACGAAAAGGTGCTCCGGGAATTTAATCATGTTAA 1482
Query 1322 CCCACAAGATGAAGATGAAGGAAAAATATTTGGTGACACAAGGAATATGTTACATCTGAA 1381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1483 CCCACAAGATGAAGATGAAGGAAAAATATTTGGTGACACAAGGAATATGTTACATCTGAA 1542
Query 1382 TGTTGCTGCTTGCTTGCTTAAAATGGGAGAGTGGAGGAAATCTATAGAGACATGCAATAA 1441
|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1543 TGTTGCGGCTTGCTTGCTTAAAATGGGAGAGTGGAGGAAGTCTATAGAGACATGCAATAA 1602
Query 1442 GGTCCTAGAAGCAAAGCCTGGTCATGTGAAAGGTCTCTACCGCCGCGGAATGGCTTACAT 1501
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1603 GGTTCTAGAAGCAAAGCCTGGTCATGTGAAAGGTCTATACCGCCGCGGAATGGCTTACAT 1662
Query 1502 TGCTGGTGGAGAGTATGATGACGCTAGAAATGACTTCAATATGATGATCAAAGTGGATAA 1561
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1663 TGCAGGTGGAGAGTATGATGACGCTAGAAATGACTTCAATATGATGATCAAAGTGGATAA 1722
Query 1562 ATCATCAGAAGCTGATGCGACCGCTGCTCTATTGAAACTGAAGCAGAAGGAACAG 1616
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1723 ATCATCAGAAGCTGATGCGACCGCTGCTCTATTGAAACTGAAGCAGAAGGAACAG 1777
Score = 363 bits (196), Expect = 5e-99
Identities = 214/223 (96%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 1728 ATAGAAGAAGTAGATGAGACAAAGGATAATGATGATGATGAAACACAGGAAGAAGAAGGA 1787
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1880 ATAGAAGAAGTAGATGAGACAAAGGATAATGATGATGATGAAACACTGGAAGAAGAAGGA 1939
Query 1788 ACTACGACAGTGAGCACGGAAAGGAAGAGGAAATGGTCGGAGAAAGCCTGGCCATTTCTG 1847
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1940 GCTACGACAGTGAGCACGGAAAGGAAGAGGAAATGGTCGGAGAAAGCCTGGCCGTTTCTG 1999
Query 1848 AAGAACGTGATGCTCCAAATCGGAATCCAGCTCGGTGTTGTCCTGTTAGGGATTTTGATT 1907
|||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||
Sbjct 2000 AAGAACGTGATGCTCCAAATCGGAATCCAGCTTGGTGTTGTTCTGATAGGGATTTTGATT 2059
Query 1908 TTTCAGTTTGTGGGCGCCAAATTTACATGAGAGAGCTATGAAT 1950
|| ||||||||| |||||||||||||||||||||| |||||||
Sbjct 2060 TTCCAGTTTGTGAGCGCCAAATTTACATGAGAGAGATATGAAT 2102
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96987452940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5