BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938313
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54020.1 | Symbols: AtIPCS1 | Arabidopsis Inositol phosphory... 1576 0.0
AT2G37940.1 | Symbols: AtIPCS2 | Arabidopsis Inositol phosphory... 944 0.0
> AT3G54020.1 | Symbols: AtIPCS1 | Arabidopsis Inositol phosphorylceramide
synthase 1 | chr3:20005733-20008254 FORWARD LENGTH=1517
Length=1517
Score = 1576 bits (853), Expect = 0.0
Identities = 921/955 (96%), Gaps = 0/955 (0%)
Strand=Plus/Plus
Query 5 TAACAAACAAGATTATAATGACGCTTTACATTCGCCGCGAAGCTTCCAAGCTATGGAAGA 64
||||||| |||| |||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 349 TAACAAAGAAGAAGATAATGACGCTTTATATTCGCCGCGAAGCTTCCAAGCTATGGAGGA 408
Query 65 GATTTTGTTCGGAAATAACGACAGAGATTGGTCTCCTCGCTGAGAACTGGAAATACCTTC 124
||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 409 GATTTTGTTCGGAAATAACAACGGAGATTGGTCTCCTCGCTGAGAACTGGAAATACCTTC 468
Query 125 TTGCTGGTCTTCTCTGTCAGTATATTCATGGTTTAGCTGCTAGGGGAGTTCATTATATTC 184
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 469 TTGCTGGTCTTCTCTGTCAGTATATTCATGGTTTAGCTGCCAGGGGAGTTCATTATATTC 528
Query 185 ACCGGCCTGGACCAACGCTTCAAGATTCTGGCTTTTTTGTTCTTCCGGAGCTTGGTCAAG 244
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 ATCGGCCAGGACCAACGCTTCAAGATTCTGGCTTTTTTGTTCTTCCGGAGCTTGGTCAAG 588
Query 245 ATAAAGGCTACATAAGTGAAACTGTGTTCACTTGTGTATTTCTTTCATTTTTCCTGTGGA 304
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 589 ATAAAGGCTTCATAAGTGAAACTGTGTTCACTTGTGTATTTCTTTCATTTTTCCTGTGGA 648
Query 305 CTTTCCATCCTTTCATCGTGAAAAGCAAGAAGATATACACTGTGTTGATATGGTGCAGGG 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 649 CTTTCCATCCTTTCATCGTGAAAAGCAAGAAGATATACACTGTGTTGATATGGTGCAGGG 708
Query 365 TTCTCGCCTTCTTAGTTGCTTGTCAGTTTCTCCGTGTTATAACATTCTATTCGACTCAGC 424
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 709 TTCTCGCCTTCTTAGTTGCTTGTCAGTTTCTCCGTGTTATAACATTCTATTCAACTCAGC 768
Query 425 TTCCTGGCCCCAACTATCACTGTCGAGAGGGTTCTGAGCTTGCCAGGTTGCCACGGCCAC 484
|||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 769 TTCCTGGCCCTAACTATCACTGTCGAGAGGGTTCTGAGCTTGCCAGGTTGCCAAGGCCAC 828
Query 485 ATAACGTTCTTGAGGTGCTCTTGCTCAACTTTCCTCGTGGGGTGATATACGGATGTGGAG 544
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 829 ATAACGTTCTTGAGGTTCTCTTGCTCAACTTTCCTCGTGGTGTGATATACGGATGTGGAG 888
Query 545 ACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTATCCGCACTTACCAGAAAT 604
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 889 ACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTGTCCGCACTTACCAGAAAT 948
Query 605 ACGGTTCTAAAAGGTTCATAAAGCTGTTAGGTTGGGTCGTTGCCATCTTGCAAAGCCTCT 664
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 949 ACGGTTCTAAAAGGTTCATAAAGCTGTTAGGTTGGGTCATTGCCATCTTGCAAAGCCTCT 1008
Query 665 TGATTATTGCCTCCCGTAAACATTACACTGTCGATGTGGTTGTTGCGTGGTATACTGTGA 724
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1009 TGATTATTGCGTCCCGTAAACATTACACTGTTGATGTGGTTGTTGCGTGGTATACTGTGA 1068
Query 725 ACTTGGTTGTCTTCTTCCTCGACAAGAAATTACCAGAATTGCCTGATCGAACAACGGTAT 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1069 ACTTGGTTGTCTTCTTCCTCGACAAGAAATTACCAGAATTGCCTGATCGAACAACGGCAT 1128
Query 785 TGCTCCCTGTGATCTCGAAAGACAGAAGCAAAGAAGAGAATCACAAACTCTTGAACGGGA 844
|||||||||||||||| |||||||||| ||||||||||| ||||||||||||||| ||||
Sbjct 1129 TGCTCCCTGTGATCTCAAAAGACAGAACCAAAGAAGAGAGTCACAAACTCTTGAATGGGA 1188
Query 845 ACGGTGTTGATCCTGCAGATAGGAGACTGAGGGCTCAAGTGAATGGCAAAGACAGCAATG 904
|||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1189 ACGGTGTTGATCCTGCAGATCGGAGACCGAGGGCTCAAGTGAATGGCAAAGACAGCAATG 1248
Query 905 GAGGTCACACTGATAATGGTACCAATAGTGCATGAGAACTCTGCTCGACTTTAGT 959
|||||||||||||||||| ||| ||| | ||||||| |||||||||||| ||||
Sbjct 1249 GAGGTCACACTGATAATGCTACTAATGGCACATGAGATCTCTGCTCGACTCTAGT 1303
> AT2G37940.1 | Symbols: AtIPCS2 | Arabidopsis Inositol phosphorylceramide
synthase 2 | chr2:15876750-15879655 FORWARD LENGTH=1581
Length=1581
Score = 944 bits (511), Expect = 0.0
Identities = 794/929 (85%), Gaps = 25/929 (3%)
Strand=Plus/Plus
Query 6 AACAAACAAG-ATTAT-A-ATGACGCTTTACATTCGCCGCGAAGCTTCCAAGCTATGGAA 62
|||||||||| || || | ||||| ||||| ||||| || ||| ||||||||||||||||
Sbjct 401 AACAAACAAGAATAATAAGATGACACTTTATATTCGTCGTGAATCTTCCAAGCTATGGAA 460
Query 63 GAGATTTTGTTCGGAAATAACGACAGAGATTGGTCTCCTCGCTGAGAACTGGAAATACCT 122
||||||||| || || ||| |||| ||||||||||| || ||||||||||||||||| ||
Sbjct 461 GAGATTTTGCTCTGAGATATCGACGGAGATTGGTCTTCTTGCTGAGAACTGGAAATATCT 520
Query 123 TCTTGCTGGTCTTCTCTGTCAGTATATTCATGGTTTAGCTGCTAGGGGAGTTCATTATAT 182
||| ||||||||| |||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 521 TCTCGCTGGTCTTATCTGTCAGTACATTCATGGTTTAGCTGCTAAAGGAGTTCATTATAT 580
Query 183 TCACCGGCCTGGACCAACGCTTCAAGATTC-TGGCTTTTTTGTTCTTCCGGAGCTTGGTC 241
||| || || ||||| || ||||| || || |||||| ||| ||||||||||||||||||
Sbjct 581 TCATCGCCCGGGACCGACACTTCAGGA-TCTTGGCTTCTTTCTTCTTCCGGAGCTTGGTC 639
Query 242 AAGATA-AAGGCTACATAAGTGAAACTGTGTTCACTTGTGTATTTCTTTCATTTTTCCTG 300
|||| | || |||||||||||||||| ||||||||| |||| |||||||| |||||||||
Sbjct 640 AAGAGAGAA-GCTACATAAGTGAAACCGTGTTCACTAGTGTGTTTCTTTCGTTTTTCCTG 698
Query 301 TGGACTTTCCATCCTTTCA-TCGTGAAAAGCAAGAAGATATACACTGTGTTGATATGGTG 359
|||||||||||||| |||| || |||||| ||| ||||||||||| || |||||||||||
Sbjct 699 TGGACTTTCCATCCATTCATTC-TGAAAACCAAAAAGATATACACCGTTTTGATATGGTG 757
Query 360 CAGGGTTCTCGCCTTCTTAGTTGCTTGTCAGTTTCTCCGTGTTATAACATTCTATTCGAC 419
||| ||||| || ||||||||||| || |||||||||||||||||||| |||||||| ||
Sbjct 758 CAGAGTTCTAGCATTCTTAGTTGCCTGCCAGTTTCTCCGTGTTATAACTTTCTATTCAAC 817
Query 420 TCAGCTTCCTGGCCCCAACTATCACTGTCGAGAGGGTTCT-GAGCTTGCCAGGTTGCCAC 478
||||||||||||||| ||||||||||| || ||||| ||| || || | |||||||||
Sbjct 818 TCAGCTTCCTGGCCCTAACTATCACTGCCGTGAGGGCTCTAAAG-TTTCTAGGTTGCCAT 876
Query 479 GGCCACATAA-CGTTCTTGAGGTGCTCTTGCTCAACTTTCCTCGTGGGGTGATATACGGA 537
|||| || || || ||||||||| ||| | | ||| |||| ||||||||| || |||
Sbjct 877 GGCC-CAAAAGCGCTCTTGAGGTTCTCGAGATTAAC---CCTCATGGGGTGATGTATGGA 932
Query 538 TGTGGAGACCTGATTTTCTCATCGCACATGATATTCACACTAGTCTTTATCCGCACTTAC 597
|| ||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||
Sbjct 933 TGCGGAGACCTGATTTTCTCATCGCACATGATATTCACTCTAGTCTTTGTCCGTACTTAC 992
Query 598 CAGAAATACGGTTCTAAAAGGTTCATAAAGCTGTTAGGTTGGGTCGTTGCCATCT-TGCA 656
|||||||| || |||||||||||||||||||||| || ||| || ||| || | ||||
Sbjct 993 CAGAAATATGGCACTAAAAGGTTCATAAAGCTGTTTGGGTGGCTCACTGCAAT-TGTGCA 1051
Query 657 AAGCCTCTTGATTATTGCCTCCCGTAAACATTACACTGTCGATGTGGTTGTTGCGTGGTA 716
||||||||||| |||||||| ||||||||||||| ||||||||| |||||||| |||||
Sbjct 1052 GAGCCTCTTGATCATTGCCTCTCGTAAACATTACAGTGTCGATGTAGTTGTTGCATGGTA 1111
Query 717 TACTGTGAACTTGGTTGTCTTCT-TCCTCGACAAGAAATTACCAGAATTGCCTGATCGAA 775
||||||||| ||||| || |||| || | |||||||||||||||||||| || ||||| |
Sbjct 1112 TACTGTGAATTTGGTGGTGTTCTGTC-TAGACAAGAAATTACCAGAATTACCAGATCGGA 1170
Query 776 CAACGGTATTGCTCCCTGTGATCTCGAAAGACAGAAGCAAA-GAAGAGAATCACAAACTC 834
| | || |||||||| || ||||| |||||||||| |||| |||||||| ||||| ||
Sbjct 1171 CTGCTGTGTTGCTCCCAGTAATCTCAAAAGACAGAA-CAAAAGAAGAGAACCACAAGCTG 1229
Query 835 TTGAACGGGAACGGTGTTGATCCTGCAGATAGGAGACTGAGGGCTCAAGTGAATGGCAA- 893
||||| || ||||||||||| ||||| ||| |||||| ||||||||| ||||| || ||
Sbjct 1230 TTGAATGGAAACGGTGTTGACCCTGCTGATTGGAGACCGAGGGCTCAGGTGAACGGGAAG 1289
Query 894 A--GACAGCAATGGAGGTCACACTGATAA 920
| |||||||| |||| |||||| |||||
Sbjct 1290 ATTGACAGCAACGGAGTTCACACGGATAA 1318
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5