BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938328
Length=653
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54120.1 | Symbols: | Reticulon family protein | chr3:20041... 966 0.0
> AT3G54120.1 | Symbols: | Reticulon family protein | chr3:20041126-20042340
REVERSE LENGTH=962
Length=962
Score = 966 bits (523), Expect = 0.0
Identities = 609/651 (94%), Gaps = 4/651 (1%)
Strand=Plus/Plus
Query 5 CTGATCTTTCTTCTCAAATGGA-TTCTTCATCGGACAAGTTGTTCAACAGAGAGAGAACA 63
||||||||||||||||||| || |||||| ||||||||||||||||||||||| || |||
Sbjct 191 CTGATCTTTCTTCTCAAAT-GAGTTCTTCTTCGGACAAGTTGTTCAACAGAGACAGGACA 249
Query 64 ATACATGAGATTCTGGGAGAAGGCATTGTTGCAGATGTGATGTTGTGGAGGAAGAAGAAT 123
||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 250 ATACATGAGATTCTGGGAGGAGGCATTGTTGCAGATGTGATGCTGTGGAGGAAGAAGAAT 309
Query 124 GAGAGTGTTGGTATAGTTACAGTGACTATAGCTTCATGGATGGTGTTTGAGGCATTTGCT 183
| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 310 GTGAGTGTTGGTATAGTTACAGTGACAATAGCTTCATGGATGGTGTTTGAGGCATTTGCT 369
Query 184 TACACTATCTTTACTCTTATTTCGAGTGTTCTTCTTCTCTTGCTTTCTATTCTCTTCCTC 243
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 370 TACACTATCTTTACTCTTATTTCAAGTGTTCTTCTTCTCTTGCTCTCTATTCTCTTCCTC 429
Query 244 TGGTCCAAATCTGCTTCCATTCTCAACAGGCCATTACCGCCATTACCGGAGTTTCAAATA 303
|||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||
Sbjct 430 TGGTCCAAATCTGCTTCCATTCTCAACAGGCCATCACCGCCGTTACCGGAGTTTCAAATA 489
Query 304 AGTGAAGCGATGGCGGAAGAAGCTTCGATATGGTTACGCATCCATGTGAACAAACTACTC 363
|||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||||
Sbjct 490 AGTGAAGCGATGGCGGAAGAAGCTTCGATATGGTTACGTATTCATGTGAACAAGCTACTC 549
Query 364 CAAGTTTCGCATGACATTGCAATGGGAAGAGACTCAGAGTTGTATACCAAAGTAGCAGTC 423
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 550 CAAGTTTCGCATGACATTGCAATGGCAAGAGACTCAGAGTTGTATACCAAAGTAGCAGTG 609
Query 424 TCTCTGTTTC-TCATCTCATTAATAGGAAGCCTCATGGATTTTCAGACACTTTGCCACAC 482
|| ||||||| || ||||||| || ||||| |||||||||||||||||||||||||||||
Sbjct 610 TCACTGTTTCTTC-TCTCATTGATCGGAAGTCTCATGGATTTTCAGACACTTTGCCACAC 668
Query 483 CAGCGTTTTGGTGGTTATGACGGTTCCAGCTGTCTATGAGAGATACGAAGATCACATTGA 542
||||||||||||||||||||||||||||||| ||||||||||||| || ||| ||||||
Sbjct 669 CAGCGTTTTGGTGGTTATGACGGTTCCAGCTTTCTATGAGAGATATGAGGATTACATTGT 728
Query 543 TGGATCTATACTGTTTATCTACAACAAAGCTAAAGAGCTTTACCTTAGAGTCGAGATATT 602
||| ||||| |||||||| ||||||| ||| |||||||||||||||| |||||||||
Sbjct 729 TGGCTCTATTGAGTTTATCTGCAACAAAACTAGAGAGCTTTACCTTAGACTCGAGATATG 788
Query 603 GGCTTTTCCAGAAAATAAGAAACTGAGCTGAGATGCTATCACCTCTTTCTT 653
|||| ||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 789 GGCTAATCCGGAAAATAAGAAACTGAGCTGAGATGCTGTCACCTCTTTCTT 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 31547044316
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5