BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938332

Length=500
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G23780.1 | Symbols:  | F-box family protein | chr1:8406686-8...   230    1e-59


> AT1G23780.1 | Symbols:  | F-box family protein | chr1:8406686-8408525 
REVERSE LENGTH=1840
Length=1840

 Score =  230 bits (124),  Expect = 1e-59
 Identities = 300/379 (79%), Gaps = 36/379 (9%)
 Strand=Plus/Plus

Query  96    GTTATCGATACTT-TGA-AGTCTGACAAAGAAGGCTCTTCGAGTATCTACCGTGAGGTGT  153
             ||||| ||||||| | | | |||||| |||||||||||||||||||||||||||| ||||
Sbjct  862   GTTATGGATACTTCT-ACA-TCTGACGAAGAAGGCTCTTCGAGTATCTACCGTGAAGTGT  919

Query  154   TCAAGTACTGGAGAACGGTAAAATAT-GATCTTGTTATCCCGTTGTTGATTGGTATTACC  212
             ||| || |||||||| ||||||| || |  |||||||||||||||||||||||||||  |
Sbjct  920   TCATGTTCTGGAGAATGGTAAAAGATCGC-CTTGTTATCCCGTTGTTGATTGGTATTTGC  978

Query  213   AATAAA----------A-C-TCCA---TGTTTGATGTGCCTACCAACAGAGATAAAGATG  257
              |||||          | | ||||   ||||||||| || ||||||||||| ||||| ||
Sbjct  979   GATAAAGCTGGCTTGGAACCTCCACCGTGTTTGATGCGCTTACCAACAGAGCTAAAGCTG  1038

Query  258   AAGATGA-TAGAGTTGCTTCCTGGAGCGAGTGTTGCAAAGATGGCTTGCCTTTGTACAGA  316
             ||||| | |||||||||||||||| | |||| ||| ||| ||||||||  ||||||||||
Sbjct  1039  AAGAT-ACTAGAGTTGCTTCCTGGTGTGAGTATTGGAAATATGGCTTGTGTTTGTACAGA  1097

Query  317   ATTGCGGTCTCTGTCG-CTAGATGATGACTTGTGGAAA-AGAAAATGGTTGAAAGAAGCT  374
             | |||||| |||| |  | |||  |||||||||||||  ||||  || ||| | |||| |
Sbjct  1098  AATGCGGTATCTGGCATC-AGACAATGACTTGTGGAAGCAGAAG-TGCTTGGAGGAAGTT  1155

Query  375   AAGAATGTTGTTGTGATCACTCGATTCGG-TG-TTCCAGTTAATTTGGAAGGAAAATTTT  432
             || ||| ||||||||| ||   ||  ||| || ||| |||||||| ||||||  |  |||
Sbjct  1156  AATAATTTTGTTGTGA-CA---GAAGCGGGTGATTC-AGTTAATT-GGAAGGCGAGGTTT  1209

Query  433   GCTGCTTTTTGGAGG-AAA  450
             ||| ||||||||||| |||
Sbjct  1210  GCTACTTTTTGGAGGCAAA  1228



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 23861219825


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5