BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938344
Length=1300
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54250.1 | Symbols: | GHMP kinase family protein | chr3:200... 2180 0.0
AT2G38700.1 | Symbols: MVD1, ATMVD1 | mevalonate diphosphate de... 1376 0.0
> AT3G54250.1 | Symbols: | GHMP kinase family protein | chr3:20082299-20084732
REVERSE LENGTH=1473
Length=1473
Score = 2180 bits (1180), Expect = 0.0
Identities = 1254/1291 (97%), Gaps = 0/1291 (0%)
Strand=Plus/Plus
Query 10 TGGAGCTTCACATGGCGACGGAGAAATGGGTGTTCATGGTGACGGCGCAAACTCCGACGA 69
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 34 TGGAGATTCACATGGCGACGGAGAAATGGGTGTTCATGGTGACGGCGCAAACTCCGACGA 93
Query 70 ACATTGCGGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCGTTAACG 129
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 94 ACATTGCGGTGATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCGTTAACG 153
Query 130 ATAGCATTAGCGTAACTCTTGATCCCGATCATCTCTGTACCGTTACTACTGTCGCCGTTA 189
||||||||||||||||||||||||| ||||||||||| || || || ||||| |||||||
Sbjct 154 ATAGCATTAGCGTAACTCTTGATCCTGATCATCTCTGCACAGTCACCACTGTTGCCGTTA 213
Query 190 GTCCTGCGTTTGATCGGGATCGAATGTGGCTCAATGGCAAGGAAATATCTCTATCTGGAA 249
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 214 GTCCTGCTTTTGATCGGGATCGAATGTGGCTCAATGGCAAGGAAATATCTCTTTCTGGAA 273
Query 250 GTAGGTACCAAAATTGTTTGAGGGAGATTCGAAGTCGTGCTGGTGATGTTGAAGACAAGG 309
||||||||||||||||||||||||| || ||| |||||||||||||||||||||||| ||
Sbjct 274 GTAGGTACCAAAATTGTTTGAGGGAAATACGAGGTCGTGCTGGTGATGTTGAAGACATGG 333
Query 310 AAAAGGGGATCACGATAGGGAAGAAAGATTGGGAGAAATTGCATCTACACATTGCTTCTC 369
|||||||||||| |||| ||||||||||||||||||||||| ||||||| ||||||||||
Sbjct 334 AAAAGGGGATCAAGATAAGGAAGAAAGATTGGGAGAAATTGAATCTACATATTGCTTCTC 393
Query 370 ATAACAACTTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGATTTGCTTGTCTAG 429
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 394 ATAATAACTTCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGATTTGCTTGTCTAG 453
Query 430 TTTTTTCTCTTGCAAAGTTGATGAATGTAGATGAAGATCCAAGCCATCTTTCTGCAATAG 489
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 454 TTTTTTCTCTTGCAAAGTTGATGAATGTAGATGAAGATCCAAGCCATCTTTCTGCAATAG 513
Query 490 CCAGGCAAGGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGTGGATTTGTCAAGTGGACAA 549
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 514 CCAGGCAAGGTTCAGGAAGTGCTTGCCGGAGTTTATTTGGTGGATTTGTCAAGTGGACAA 573
Query 550 TGGGAAGCAAAGAAGATGGAAGTGACAGCGTTGCAGTTCAACTGGCAGATGAGAAGCATT 609
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 574 TGGGAAGCAAAGAAGATGGAAGTGACAGCGTTGCAGTTCAACTGGCAGATGAGAAGCATT 633
Query 610 GGGATGATCTTGTTATCATCATTGCTGTGGTGAGTTCACAGCAGAAGGAAACGAGCAGTA 669
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 634 GGGATGATCTTGTTATCATCATTGCTGTGGTGAGTTCACGGCAGAAGGAAACGAGCAGTA 693
Query 670 CCTCCGGAATGCGTGAAAGTGTTGAGACGAGTTTGCTTTTACAGCATAGAGCAAAAGAAG 729
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 694 CCTCCGGAATGCGTGAAAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAAGAAG 753
Query 730 TTGTGCCAAAACGGATTTTGCAAATGGAGGAAGCTATAAAAAATCGAGACTTTGCATCCT 789
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 754 TTGTGCCAAAACGGATTTTGCAAATGGAGGAAGCTATAAAAAATCGAGACTTTGCATCGT 813
Query 790 TTACACAATTGACATGTACAGATAGTAATCAGTTTCATGCTGTTTGTCTGGATACATCTC 849
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 TTACACAATTGACATGTACAGATAGTAATCAGTTTCATGCTGTTTGTCTGGATACATCTC 873
Query 850 CACCCATATTCTACATGAATGACACTTCACACAGAATTATTAGCTTAGTTGAAAAGTGGA 909
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 874 CACCCATATTCTACATGAATGACACTTCACACAGAATAATTAGCTTAGTTGAAAAGTGGA 933
Query 910 ACCGTTCTGAAGGGACACCACAGGTTGCTTACACATTTGATGCTGGTCCAAATGCTGTAC 969
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 934 ACCGTTCTGAAGGGACACCACAGGTTGCTTACACATTTGATGCTGGTCCAAATGCTGTAC 993
Query 970 TGATTGCACGCAACAGAAAGGTCGCAGTTCAATTGCTTCAGGGGCTTCTGTACTATTTCC 1029
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 994 TGATTGCACGCAACAGAAAGGTCGCAGTCCAATTGCTCCAGGGGCTTCTGTACTATTTTC 1053
Query 1030 CCCCTAAGTCAGACACTGATATGAAGAGTTACGTAGTGGGGGATAATTCGATTCTAAAAG 1089
|||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||
Sbjct 1054 CCCCTAAGTCAGACACTGATATGAAGAGTTACGTAGTGGGCGATAATTCAATTCTAAAAG 1113
Query 1090 AAGCAGGACTAGATGGAGCAAGTGGTGTCGAAAATCTGCAACCTCCGCCTGAAATTAAAG 1149
|||||||| ||||||||||||||||||| || |||||||||||||| |||||||||||||
Sbjct 1114 AAGCAGGATTAGATGGAGCAAGTGGTGTAGAGAATCTGCAACCTCCACCTGAAATTAAAG 1173
Query 1150 ACAACATTGGATCTCAGGATCAAAAAGGAGAAGTCAGTTATTTTATCTGCACTAGACCTG 1209
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1174 ACAACATTGGATCTCAGGATCAAAAAGGAGAAGTCAGTTATTTTATCTGCACTAGACCTG 1233
Query 1210 GAAAAGGTCCCATCTTGCTTCAGGACCAAACTCAAGCCCTTCTCGATCCTGAAACTGGCC 1269
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 1234 GAAAAGGTCCCATCGTGCTTCACGACCAAACTCAAGCCCTTCTCGATCCTGAAACAGGCC 1293
Query 1270 TTCCTAAGTGAGCATTTTCTCTGCTGCAAAC 1300
|||||||||||||||| |||||||| |||||
Sbjct 1294 TTCCTAAGTGAGCATTCTCTCTGCTTCAAAC 1324
> AT2G38700.1 | Symbols: MVD1, ATMVD1 | mevalonate diphosphate
decarboxylase 1 | chr2:16180696-16183946 REVERSE LENGTH=1622
Length=1622
Score = 1376 bits (745), Expect = 0.0
Identities = 1107/1277 (87%), Gaps = 43/1277 (3%)
Strand=Plus/Plus
Query 21 ATGGC-GACGGAGAAATGGGTGTTCATGGTGACGGCGCAAACTCCGACGAACATTGCGGT 79
||||| || ||||||||||||| | |||||||||||||| ||||| ||||| || || ||
Sbjct 162 ATGGCGGA-GGAGAAATGGGTGGTGATGGTGACGGCGCAGACTCCAACGAATATCGCCGT 220
Query 80 GATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTCCCCGTTAACGATAGCATTAG 139
||||||||||||||||||||||||||||||||||||||| ||| |||| |||||||||||
Sbjct 221 GATTAAGTATTGGGGAAAGAGAGATGAGGTTCGGATTCTTCCCATTAATGATAGCATTAG 280
Query 140 CGTAACTCTTGATCCCGATCATCTCTGTAC-CGTTACTACTGTCGCCGTTAGTCCTGCGT 198
||| || |||||||| ||||| |||||||| | | || || ||||| ||||||||| | |
Sbjct 281 CGTCACGCTTGATCCTGATCACCTCTGTACTC-TCACCACCGTCGCTGTTAGTCCTTCCT 339
Query 199 TTGATCGGGATCGAATGTGGCTCAATGGCAAGGAAATATCTCTATCTGGAAGTAGGTACC 258
||||||| ||||||||||||||||||||||||||||| || || ||||||||||||||||
Sbjct 340 TTGATCGAGATCGAATGTGGCTCAATGGCAAGGAAATCTCGCTTTCTGGAAGTAGGTACC 399
Query 259 AAAATTGTTTGAGGGAGATTCGAAGTCGTGCTGGTGATGTTGAAGACAAGGAAAAGGGGA 318
| ||||| |||||||| |||||||||||||||| |||||| ||||| || |||||||| |
Sbjct 400 AGAATTGCTTGAGGGAAATTCGAAGTCGTGCTGATGATGTAGAAGATAAAGAAAAGGGTA 459
Query 319 TCACGATAGGGAAGAAAGATTGGGAGAAATTGCATCTACACATTGCTTCTCATAACAACT 378
||| ||| | |||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 460 TCAAGATTGCGAAGAAAGATTGGGAGAAGCTGCATCTGCACATTGCTTCTCATAACAACT 519
Query 379 TCCCTACTGCTGCTGGCTTAGCATCTTCAGCTGCTGGATTTGCTTGTCT-AGTTTTTTCT 437
|||||||||||||||||||||||||||| |||||||| |||||||| || ||||||| ||
Sbjct 520 TCCCTACTGCTGCTGGCTTAGCATCTTCTGCTGCTGGTTTTGCTTG-CTTAGTTTTTGCT 578
Query 438 CTTGCAAAGTTGATGAATGTAGATGAAGATCCAAGCCATCTTTCTGCAATAGCCAGGCAA 497
||||| ||||||||||||||| |||||||||||||||| |||||||| ||||| ||||||
Sbjct 579 CTTGCCAAGTTGATGAATGTAAATGAAGATCCAAGCCAACTTTCTGCTATAGCAAGGCAA 638
Query 498 GGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGTGGATTTGTCAAGTGGACA-ATGGGAAG 556
|||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||
Sbjct 639 GGTTCAGGAAGTGCTTGCCGTAGTTTATTTGGGGGATTTGTCAAGTGGA-ATATGGGAAA 697
Query 557 CAAAGAAGATGGAAGTGACAGCGTTGCAGTTCAACTGGCAGATGAGAAGCATTGGGATGA 616
||||||||||||||||||||| |||||||||||||||| |||||| ||||| ||||||||
Sbjct 698 CAAAGAAGATGGAAGTGACAGTGTTGCAGTTCAACTGGTAGATGATAAGCACTGGGATGA 757
Query 617 TCTTGTTATCATCATTGCTGTGGTGAGTTCAC-AGCAGAAGGAAACGAGCAGTACCTCCG 675
|||||||||||| ||||||||||| ||||||| | ||||||||||| ||||| ||||| |
Sbjct 758 TCTTGTTATCATTATTGCTGTGGTTAGTTCACGA-CAGAAGGAAACAAGCAGCACCTCGG 816
Query 676 GAATGCGTGAAAGTGTTGAGACGAGTTTGCTTTTACAGCATAGAGCAAAAGAAGTTGTGC 735
|||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||| |
Sbjct 817 GAATGCGTGAGAGTGTTGAGACAAGTTTGCTTTTACAGCATAGAGCAAAGGAAGTTGTCC 876
Query 736 CAAAACGGATTTTGCAAATGGAGGAAGCTATAAAAAATCGAGACTTTG-CATCCTTTACA 794
|| |||||||||||||||||| ||||||||||| |||||||| ||| |||| ||||||
Sbjct 877 CAGTACGGATTTTGCAAATGGAAGAAGCTATAAAGAATCGAGA-TTTCACATCTTTTACA 935
Query 795 CAATTGACATGTACAGATAGTAATCAGTTTCATGCTGTTTGTCTGGATACATCTCCACCC 854
||||||| ||| |||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 936 AAATTGACGTGTTCAGACAGTAATCAGTTTCATGCTGTTTGTATGGATACATCTCCACCC 995
Query 855 ATATTCTACATGAATGACACTTCACACAGAATTATTAGCTTAGTTGAAAAGTGGAACCGT 914
|||||||||||||||||||| || ||||| || || ||||||||||||||||||||||||
Sbjct 996 ATATTCTACATGAATGACACCTCCCACAGGATAATCAGCTTAGTTGAAAAGTGGAACCGT 1055
Query 915 TCTGAAGGGACACCACAGGTTGCTTACACATTTGATGCTGGTCCAAATGCTGT-ACTGAT 973
|||| || |||||| || ||||||| |||||||||||||| |||||||| || | ||||
Sbjct 1056 TCTGCCGGTACACCAGAGATTGCTTATACATTTGATGCTGGCCCAAATGCAGTCA-TGAT 1114
Query 974 TGCACGCAACAG-AAAGGTCGCAGTTCAATTGCTTCAGGGGCTTCTGTACTATTTCCCCC 1032
|||| | ||||| |||| | |||||| ||||||| |||||||| || |||| ||||| |
Sbjct 1115 TGCAAGAAACAGGAAAG-TAGCAGTTGAATTGCTGCAGGGGCTGCTCTACTGCTTCCCTC 1173
Query 1033 CTAAGTCAGACACTGATATGAAGAGTTACGTAGTGGGGGATA-ATTCGATTCTAAAAGAA 1091
||||| | ||||| || ||||||||||||||| ||||||||| || |||| |||||||
Sbjct 1174 CTAAGCCTGACACAGACATGAAGAGTTACGTACTGGGGGATACAT-CGATAGTAAAAGAG 1232
Query 1092 GCAGGACTAG-ATGGAGCAAGTGGTGTCGAAAATCTGCAACCTCCGCCTGAAATTAAAGA 1150
||||| || | | |||| | | | || | | || | ||| |||||||
Sbjct 1233 GCAGG-CTTGGAAGGAG-A-GC--T-TCCA----C---AA-----G---GAA-TTAAAGA 1270
Query 1151 CAACATTGGATCTCAGGATCAAAAAGGAGAAGTCAGTTATTTTATCTGCA-CTAGACCTG 1209
||| |||||| ||||||||||||||| ||||| ||||||||||| |||| | |||||||
Sbjct 1271 CAAAATTGGAAGTCAGGATCAAAAAGGTGAAGTGAGTTATTTTATATGCAGC-AGACCTG 1329
Query 1210 GAAAAGGTCCCATCTTGCTTCAGGACCAAACTCAAGCCCTTCTCGATCCTGAAACTGGCC 1269
||| |||||| | ||||||| |||||||||||||| |||||| ||||| |||||||||
Sbjct 1330 GAAGAGGTCCTGTGGTGCTTCAAGACCAAACTCAAGCTCTTCTCCATCCTCAAACTGGCC 1389
Query 1270 TTCCTAAGTGAGCATTT 1286
| || || | | |||||
Sbjct 1390 TCCCCAAATAACCATTT 1406
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63955494330
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5