BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938346
Length=1316
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54270.1 | Symbols: | sucrose-6F-phosphate phosphohydrolase... 2043 0.0
> AT3G54270.1 | Symbols: | sucrose-6F-phosphate phosphohydrolase
family protein | chr3:20087082-20089846 REVERSE LENGTH=1726
Length=1726
Score = 2043 bits (1106), Expect = 0.0
Identities = 1243/1309 (95%), Gaps = 9/1309 (1%)
Strand=Plus/Plus
Query 14 GAAATCGATGGATAGGCTTGAAGGACCACCACGTCTCATACTTGTTGCCGATCTTGATTG 73
|||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||
Sbjct 105 GAAATCGATGGATAGGCTTGAAGGACCACCACGTCTCATACTAGTTGCTGATCTCGATTG 164
Query 74 CACATTGGTGGATCACGATGATCCTGAAAACACCGATCTTCTCAGATTCAATGCGCTTTG 133
|||||||||||||||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 165 CACATTGGTGGATCACGATGATCCTGAAAACAATGACCTTCTTAGATTCAATGCGCTTTG 224
Query 134 GGAAGCTCACTATCGCCATGATTCATTGCTTATTTACTGCACCGGGAGGTCTTTCAGTTC 193
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 225 GGAAGCTCACTATCGCCATGATTCATTGCTTGTTTATTGCACCGGGAGGTCTTTCAGTTC 284
Query 194 TTACAT-GAGTCTAAGAAAGAAGAGACCGTTGTTGACGCCGGACATCGCCGTAACTTCTG 252
|||| | |||||| || |||||||||||||||||||| || |||||||||||||||||||
Sbjct 285 TTAC-TCGAGTCTGAGGAAGAAGAGACCGTTGTTGACTCCTGACATCGCCGTAACTTCTG 343
Query 253 TAGGTTCTGAGATTGTGTA---CAGCGGTGAATCAACAGTGTCGGATGTTGTTTGGACTG 309
| |||||||||||||| || | ||||||||||||| ||||| ||||||||||||||||
Sbjct 344 TGGGTTCTGAGATTGTATACGGCGGCGGTGAATCAACGGTGTCTGATGTTGTTTGGACTG 403
Query 310 CTCGTTTGGATTATAAGTGGAATAGAGAAATTGTTGTTGAGGAAACTCTTAAATTCCCTA 369
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 404 CTCGTTTGGATTATAAGTGGAATAGAGACATTGTTGTTGAGGAAACTCTTAAATTCCCTA 463
Query 370 AACTTGAGCCTCAGCCAGACAAGAGCCAAGAAGAGCACAAAGTGAGtttttttGTGGAAA 429
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||
Sbjct 464 AACTTGAGCCTCAGCCAGACAAGAGCCAAGAAGAGCACAAAGTGAGTTTTTTCGTGGGAA 523
Query 430 GAGAAGACGCTGTTGAAATAATGAAGGAACTTCCAGGGATATTAGAGGAGCGTGGGGTGG 489
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 524 GAGAAGACGCTGTTGAAATAATGAAGGTTCTTCCAGGGATATTAGAGGAGCGTGGGGTGG 583
Query 490 ATGTGAAGCTGGTTTATAGCAATGGCTATGCTTTCGATGTATTACCAAGAGGAGCTGGCA 549
||||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||
Sbjct 584 ATGTGAAGCTGGTTTATAGTAATGGATATGCTTTTGATGTATTACCAAGAGGAGCTGGCA 643
Query 550 AACAAGGTGCTTTGACATATCTACTTGACAAGTTGGATATTGAAGGCAATCAGCCTTCTA 609
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 644 AACAAGGTGCTTTGACATATCTACTTGACAAGTTGGATATTGAAGGCAAGCAGCCTTCTA 703
Query 610 ATACACTTGTTTGCGGTGACTCTGGAAACGATGCTGAGCTCTTCAACATTTCTCAAGTAT 669
| ||||||||||| |||||||||||||| ||||||||||| |||||||||||| | ||||
Sbjct 704 ACACACTTGTTTGTGGTGACTCTGGAAATGATGCTGAGCTTTTCAACATTTCTGACGTAT 763
Query 670 ATGGTGTAATGGTTAGCAATTCGCATGAAGAATTATTACAATGGCATGAAGAAAATGCAA 729
|||| |||||||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 764 ATGGCGTAATGGTTAGCAATTCGCATGAAGAATTATTGCAATGGTATGAAGAAAATGCAA 823
Query 730 AGGACAATCCAAAAATATTTCATGCGTCCGAGAGATGTGGGGCTGGTATCATAGAAGCCA 789
||||||| |||||||||||||||||||| ||||| ||||| |||||||| |||||||| |
Sbjct 824 AGGACAACCCAAAAATATTTCATGCGTCTGAGAGGTGTGGAGCTGGTATGATAGAAGCTA 883
Query 790 TTCAGAGGTTTAATTTGGGACCAAGTGTCTCTCCAAGAGATGTTTTGGACTCTGAAATTT 849
|||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||||| ||
Sbjct 884 TTCAGAGGTTTAATTTGGGACCAAATGTCTCTCCTAGAGATGTTATGGACACTGAAAATT 943
Query 850 TCCA-GGCGGAAAGTTTGAATCTTGCTCATGAGGTTGTTCAGTTTTATTTGTTGTATGAG 908
|||| || |||||||||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct 944 TCCATGG-GGAAAGTTTGAATCCTGCTCATGAGGTTGTTCAGTTTTATTTGTTTTATGAG 1002
Query 909 AGATGGTGTTGTGGAGAGGTGGAGAAGTCTGACAAGTATTTGCAGAATTTGAAATCGCTC 968
|||||| |||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 1003 AGATGGCGTTGTGGAGAGGTGGAAAAGTCTGACAAGTACTTGCAGAATTTGAAATCGCTC 1062
Query 969 TCTAGTCCACTTGGTATTTTTGTTCATCCGTCTGGAGTGGAGAAACCGATACATGAATGG 1028
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1063 TCTAGTCCACTTGGTATTTTTGTTCATCCGTCTGGAGTGGAGAAACCGATACATGAATGG 1122
Query 1029 ATAGATGAGATGGAAAATTTATATGGTGATGGGAAGGAAAAGAAGTTTCGCATTTGGTTG 1088
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1123 ATAGATGAGATGGAAAATTTATACGGTGATGGGAAGGAAAAGAAGTTTCGCATTTGGTTG 1182
Query 1089 GATAATGTTTCGTCTTCTCATATCAGTTCAGATACATGGCTTGCAAAATTTG-ACAAGCA 1147
||||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1183 GATAATGTTACGTCTTCTCATATCAGTTCAGATACATGGCTTGCAAAATTTGTA-AAGCA 1241
Query 1148 TGAGTTATCTGAGGGAAAAGTACGGTCTTGTTCAACAAAAGTCTTACTGAGTTATAAGGA 1207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TGAGTTATCTGAGGGAAAAGTACGGTCTTGTTCAACAAAAGTCTTACTGAGTTATAAGGA 1301
Query 1208 GGAAAAGCAAAGGCTGACGTGGATGCACATCCACCAATCATGGTTAGATGAATCTTTTTC 1267
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1302 GGAAAAGCAAAGGCTGACGTGGATGCACATCCACCAATCATGGTTAGATGAATCTTCTTC 1361
Query 1268 AGATGATCAAGAAAAATGGGTTTTCTAAAGCATTATCTTAATCTCGACT 1316
||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 1362 AGATGATCAAGAAAAATGGATTTTCTAAAGGATTATCTTAATCTCGACT 1410
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64758703050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5