BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938351
Length=767
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54300.1 | Symbols: ATVAMP727, VAMP727 | vesicle-associated ... 1303 0.0
> AT3G54300.1 | Symbols: ATVAMP727, VAMP727 | vesicle-associated
membrane protein 727 | chr3:20108208-20110683 REVERSE LENGTH=1041
Length=1041
Score = 1303 bits (705), Expect = 0.0
Identities = 745/765 (97%), Gaps = 0/765 (0%)
Strand=Plus/Plus
Query 3 AGGCTTCACGAGTTCAATAATGAGTCAGAAGGGTTTGATATATAGCTTTGTTGCTAAAGG 62
||| ||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 153 AGGTTTCACGAGTACAATAATGAGTCAAAAGGGTTTGATATATAGCTTTGTTGCTAAAGG 212
Query 63 AACAGTTGTTCTTGCGGAGCATACTCCTTATTCAGGAAACTTTAGCACCATTGCTGTTCA 122
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 213 AACAGTTGTTCTAGCAGAGCATACTCCTTATTCAGGAAACTTTAGCACCATTGCTGTTCA 272
Query 123 ATGTCTGCAGAAGCTACCCACTATTAGCAGCAAGTATACTTACTCTTGCGATGGTCATAC 182
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 273 ATGTCTGCAGAAGCTACCCACAAATAGCAGCAAGTATACTTACTCTTGCGATGGTCATAC 332
Query 183 TTTCAATTTCCTTGTTGACAATGGTTTTGTGTTTCTTGTGGTTGCTGATGAGTCCACTGG 242
|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 333 TTTCAATTTCCTTGTTGACAATGGCTTTGTGTTTCTAGTGGTTGCTGATGAGTCCACCGG 392
Query 243 AAGAAGTGTTCCTTTCGTGTTTCTTGAACGGGTCAAGGAAGACTTTAAGAAGCGGTATGA 302
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 393 AAGAAGTGTTCCTTTCGTGTTTCTCGAACGGGTCAAGGAAGACTTTAAGAAGCGGTATGA 452
Query 303 AGCGAGTATAAAGAATGATGAGCGACACCCTCTTGCAGATGAGGACGAAGATGATGATTT 362
||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct 453 AGCGAGTATAAAGAATGATGAGCGACATCCTCTTGCGGATGAGGACGAAGATGATGATTT 512
Query 363 GTTTGGAGATCAGTTTAGCATTGCATACAATCTTGACAGGGAGTTTGGGCCCATACTTAA 422
||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||
Sbjct 513 GTTTGGAGATCGGTTTAGCGTTGCATACAATCTTGACAGGGAGTTCGGGCCCATACTAAA 572
Query 423 GGAGCATATGCAGTATTGTATGAGCCATCCAGAAGAGATGAGCAAACTTTCAAAGTTGAA 482
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 573 GGAGCATATGCAGTATTGTATGAGCCATCCAGAAGAGATGAGCAAACTTTCTAAGTTGAA 632
Query 483 GGCCCAAATAACTGAGGTCAAGGGGATCATGATGGACAACATTGAGAAGGTTCTGGACAG 542
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 633 GGCCCAAATAACTGAGGTCAAGGGGATCATGATGGACAACATTGAGAAGGTTCTGGACAG 692
Query 543 AGGAGAGAAGATCGAACTTCTGGTTGACAAAACCGAGAACCTACAGTTCCAGGCAGATAG 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 693 AGGAGAGAAGATCGAACTTCTGGTTGACAAAACCGAGAACCTACAGTTCCAGGCAGATAG 752
Query 603 CTTCCAGAGACAAGGAAGGCAGTTAAGAAGGAAGATGTGGCTACAGAGTCTGCAGATGAA 662
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 CTTCCAGAGACAAGGAAGGCAGTTAAGAAGGAAGATGTGGCTACAGAGTCTGCAGATGAA 812
Query 663 GCTGATGGTGGCTGGTGCTGTTCTCTCCTTTATTCTCATCGTTTGGGTTGTTGCTTGTGG 722
|||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 813 GCTGATGGTGGCTGGTGCTGTTTTCTCTTTTATTCTCATCGTTTGGGTTGTTGCTTGTGG 872
Query 723 AGGTTTCAAATGCTCATCATGATGTTTCGCTTCGTTTGTATCTGT 767
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 873 AGGTTTCAAATGCTCATCATGATGTTTCGCTTCGTTTGTATCTGT 917
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37273737074
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5