BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938355
Length=2165
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54350.1 | Symbols: emb1967 | Forkhead-associated (FHA) doma... 3293 0.0
> AT3G54350.1 | Symbols: emb1967 | Forkhead-associated (FHA) domain-containing
protein | chr3:20122083-20126860 REVERSE LENGTH=2661
Length=2661
Score = 3293 bits (1783), Expect = 0.0
Identities = 2047/2171 (94%), Gaps = 31/2171 (1%)
Strand=Plus/Plus
Query 3 GTCTGGTTGTGTAGTGGACATGGGGGCTCTTGCCCAGGTAGTTCCGTGGATACCCGAAGA 62
||||||||||| |||| |||||||||||||||| || || ||||||||||||||||||||
Sbjct 319 GTCTGGTTGTGCAGTGAACATGGGGGCTCTTGCTCAAGTTGTTCCGTGGATACCCGAAGA 378
Query 63 CGACCTGCTGCTAAAGAATGCCGTCGAGGCCGGTGCTTCTTTGGAATCGCTTGCTAAAGG 122
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 379 CGACCTGCTGCTAAAGAATGCTGTCGAGGCTGGTGCTTCTTTGGAATCGCTTGCTAAAGG 438
Query 123 TGCTGTGCAGTTTTCTAGAAGATTTTCTATCAGAGAACTGCAAGATCGATGGCATGCACT 182
|||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 439 TGCTGTGCAGTTTTCTAGAAGATTTTCTATTAGAGAATTGCAAGATCGATGGCATGCACT 498
Query 183 GCTTTATGATCCAGTAGTTTCTGCCGAGGCGGCTTTTCGGATGACTGAGCTTGAACGTAC 242
||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 499 GCTTTATGATCCAGTAGTTTCTGTAGAGGCGGCTTTTCGGATGGCTGAGCTTGAACGTAC 558
Query 243 TAACCCTAATTTTCCTACAAAGTTTGGTAGAACTGGATATTCAAAAGAAAACAAAAGCTC 302
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 559 TAACCCTAATTTTCCTACTAAGTTTGGTAGAACTGGATATTCAAAAGAAAACAAAAGTTC 618
Query 303 ATCTAGGAAGAGGAATGCTGAAAGGCTCAGAAGTACTTATCATTCCTTGCGGAAGAAATT 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 619 ATCTAGGAAGAGGAATGCTGAAAGGCTCAGAAGTACTTATCATTCCTTGCGGAAGAAATT 678
Query 363 TCGGACTGAGCCATTTAATTCCTTGGATCTAGGTTTCCTCGTACCACCAAATGATAGCCA 422
| ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 679 TAGGACTGAGCCATTCAATTCCTTGGATCTAGGTTTCCTCGTTCCACCAAATGATAGCCA 738
Query 423 TTTCATGGATAATGGTGATGCAACAAATCTTGGTCTTGAGGACTCTCACATGGATATTAT 482
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 739 TTTCATGGATAATGGTGATGCAACACATCTTGGTCTTGAGGACTCTCACATGGATATTAT 798
Query 483 CCACAACGCGTTTCCAGAAATCTTGGCTGAAAGCGGTTGCGTGACAACTCATGTTGTGCT 542
||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||
Sbjct 799 CCACAACGCGTTTCCAGAAATCTTGGCTGAAGGTGGTTGCGTGACAACTCATGTTCTGCC 858
Query 543 GGAAGATGATTTACAGAGAAACATTCCATATGTAGGAGGAGAAAATCTCACATTCACTGA 602
|||||| |||||||| || ||||||| || |||| ||||||||||||||||||||||||
Sbjct 859 AGAAGATAATTTACAGGGAGACATTCCTTACGTAGAAGGAGAAAATCTCACATTCACTGA 918
Query 603 ACATGCAGGTCCATCAGGATGTGATGTGGTTCATCAAGATTCCGAGCAGAAACTAGAGAA 662
||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 919 ACACGCAGGTCTATCAGTATGTGATGTGGTTCATCAAGATTCCGAGCAGAAACTAGAGAA 978
Query 663 TACTGCTCACGAGGCAATAACCACAATGGCTAGCACTGATTTCCTGGCACAGCTTTCAAC 722
||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 979 TACTGCTCACGAGGCAAAAAACACAATGGCTAGCACTGATTTCCTGGCACAGCTTTCAAC 1038
Query 723 TTCTCTTTTCGAAGAAGACGTGGAACCGTTCATGGAAGTAGATGGCAAAGAAGTTGACAA 782
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1039 TTCTCTTTTCGAAGAAGACATGGAACCGTTCATGGAAGTAGATGGCAAAGAAGTTGACAA 1098
Query 783 GTCATATTATGATGGTCTTAGCTCACTGTTGGTGAACTCAACAAATGATACAAATCGCGA 842
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1099 GTCATATTATGATGGTCTTAGCTCACTGTTGGTGAACTCTACAAATGATACAAACCGCGA 1158
Query 843 GGCTTTTCCTAACTCCACCGAGCAAGATCCTTCCATTGCACCAACTCATTCAGGAGATGC 902
||||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||| ||
Sbjct 1159 GGCTTTTCCTAACCCCACCGAGCAAGAACCTTCCATTGCACCAACTCATCCAGGAGAGGC 1218
Query 903 AACTATGGATGATCATGTGATGCTTGAGCTAGATGGTACAATTGCAATTGCATCTGCTTT 962
||| ||||||||||||||||||||||||||||||||||||| | || | | |
Sbjct 1219 AACCCTGGATGATCATGTGATGCTTGAGCTAGATGGTACAAT--C----GC-T-T--T-- 1266
Query 963 AGATCCTCATCCTGAGATTGTTGGGGGTGTAATCTGCTGTTTATTAAACCAAGAGGATCC 1022
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1267 AGATCCTCATCCTGAGATTGTTGGGGGTGTAATCTGCTGTTTATTAAACGAAGAGGATCC 1326
Query 1023 TGATATTCCGTGTAATGATGACATTTTCCTATCCAACAACTCCCATCCAATGTCAGTTTC 1082
|||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||
Sbjct 1327 TGATATTCCGTGTAATGATGACATTTTCCTGTCCAACAACTCCCGTCCGATGTCAGTTTC 1386
Query 1083 TTCCTTAGCCAGGCGGAACTTTAAGGATACCAATAATCCATTAACTACATGTGTTAGAGA 1142
||| |||||| |||||||||||||||||||||||| |||| ||||||||||||| |||||
Sbjct 1387 TTCTTTAGCCCGGCGGAACTTTAAGGATACCAATAGTCCAATAACTACATGTGTAAGAGA 1446
Query 1143 CCTCTCCGCCAGTAAGGAAAAAAGTGAGGGATATTCACTCCAGACTCAAAAGAAAAACCC 1202
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 1447 CGTCTCCGCCAGTAAGGAAAAAAGTGAGGGATATTCACTCCAGGCTCAAAAGAAAAAACC 1506
Query 1203 AGGACGTTTACAGGGGTCTACTCAAGGAAAGCCAGAGATGGGCCAACCAAGTCAAGCTAG 1262
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 1507 AGGACGTTTACAGGGGTCTACTCAAGGAAAGCCAGAGATGGGCCAACCAAGTAAAGGTAG 1566
Query 1263 CAAATTCAGGGCATCGACTAGTGCTGAGTTAAAGAATACTGTAGCTCCTGGTGGTTCTAC 1322
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1567 CAAATTCAGGGCATCGACTAGTACTGAGTTAAAGAATACTGTAGCTCCTGGTGGTTCTTC 1626
Query 1323 CTGTTCTGTGTCTGCACAGGCATGCTCTAATACTCTGCTTTCTACTGGTACCGGTGCAAA 1382
|| ||| | |||||| |||||||||||||| |||||||||||||||||||||||
Sbjct 1627 CT---CTG---C---ACAGGCTTGCTCTAATACTCTACTTTCTACTGGTACCGGTGCAAA 1677
Query 1383 AGATGGAAAGAAAGAAACTGCTAGTGTAACACTCTTTGTCGGTTCTGATGGCCATGGCAG 1442
||||||||||||||||||||||| || ||||||||||||||| ||||||||||||||||
Sbjct 1678 AGATGGAAAGAAAGAAACTGCTACTGGAACACTCTTTGTCGGATCTGATGGCCATGGCAA 1737
Query 1443 CTATC-AGGAGAAGGATAGTGAAAACTGTAAAGAGAAAAATGTTGTACTACCTGTTAATG 1501
| | | || |||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1738 CCACCCAG-AGAAGGATAGTGAAAATTGTAAAGAGAAAAATGTTGTACCACCTGTTAATG 1796
Query 1502 AATCGCCACATGCTAAAGATACTGCTGATGGCTTGATAGAGATTACAAACCCTGAGCTGG 1561
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||
Sbjct 1797 AATCGCCACATGCTAAAGATACTGATGATGGCTTGATAGAGATTACAGTCCCTGAGCTGG 1856
Query 1562 AGATCACTCGTGCAGAAGCAGAAGTAGAAGC-G---C--ATGTTTGTGAGAGTGATGAGG 1615
||||||| |||||||||||||||| |||||| | | |||||||||||||||||||||
Sbjct 1857 AGATCACCCGTGCAGAAGCAGAAGCAGAAGCAGAAGCGCATGTTTGTGAGAGTGATGAGG 1916
Query 1616 ACTTACCCAATTATTCTGACATTGAGGCTATGATACTTGACATGGACTTGGAACCTGATG 1675
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1917 ACTTACCCAATTATTCTGACATTGAGGCTATGATACTTGACATGGACTTGGAACCTGATG 1976
Query 1676 ATCAAGATAATTTTGATCTCGAAGT-TGCCAAGTATCAGAGCCAGGACATGAAAAGAACA 1734
||||||||||||||||||||||||| | |||||||||||||||| |||||||||||||||
Sbjct 1977 ATCAAGATAATTTTGATCTCGAAGTCT-CCAAGTATCAGAGCCAAGACATGAAAAGAACA 2035
Query 1735 ATCATAAGACTTGAGCAGGCTGCTTATTCATATATGCAAAGAGCCATTGCTTCCCGTGGT 1794
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 2036 ATCATAAGACTTGAGCAGGCTGCTCATTCATATATGCAAAGAGCCATTGCTTCCCGTGGT 2095
Query 1795 GCATTAGCTGTTTTATATGGTAGATATTCAAAACACTACATCAAGAAGCCTGAGGTTTTG 1854
||||| |||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 2096 GCATTCGCTGTTTTATATGGCAGATATTCAAAACACTATATCAAGAAGCCTGAGGTTTTG 2155
Query 1855 GTGGGTAGATCAACAGAGGACCTCGCTGTGGACATTGATTTGGGAAGAGAAAAGCGGGGT 1914
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2156 GTGGGTAGATCAACAGAAGACCTCGCTGTGGACATTGATTTGGGAAGAGAAAAGCGGGGT 2215
Query 1915 AGCAAAATATCTCGACGACAGGCAATCATACGGCTGGGTGATGATGGGTCGTTTCATATG 1974
||||||||||||||||||||||| |||||||||||||||||||| || |||||||||||
Sbjct 2216 AGCAAAATATCTCGACGACAGGCGATCATACGGCTGGGTGATGACGGTTCGTTTCATATA 2275
Query 1975 AAAAATCTGGGGAAGTATTCAATATCAGTAAATGAGAAGGAAGTAGATCCTGGACAGAGT 2034
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2276 AAAAACCTGGGGAAGTATTCAATCTCAGTAAATGAGAAGGAAGTAGATCCTGGACAGAGT 2335
Query 2035 TTGATCCTCAAATCCGATTGTCTAGTTGAGATTCGGGGAATGCCTTTCATATTTGAAACA 2094
|| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 2336 TTAATCCTCAAATCCGATTGTCTAGTTGAGATACGGGGAATGCCTTTTATATTTGAAACA 2395
Query 2095 AACCAAAGTCGCATGCAAGAGTACCTGAAGAGAACAGGGAAACTGAACTGAGACCAGAAC 2154
||||||||| |||||||||||||||||||||||| ||||||| ||||||||||||||| |
Sbjct 2396 AACCAAAGTTGCATGCAAGAGTACCTGAAGAGAAGAGGGAAAGTGAACTGAGACCAGATC 2455
Query 2155 AAGAGTGCGTG 2165
|||||||||||
Sbjct 2456 AAGAGTGCGTG 2466
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 107378965755
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5