BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938360
Length=1318
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54400.1 | Symbols: | Eukaryotic aspartyl protease family p... 2220 0.0
> AT3G54400.1 | Symbols: | Eukaryotic aspartyl protease family
protein | chr3:20140058-20142642 REVERSE LENGTH=1554
Length=1554
Score = 2220 bits (1202), Expect = 0.0
Identities = 1280/1318 (97%), Gaps = 4/1318 (0%)
Strand=Plus/Plus
Query 3 AAATCAAGATCTTAAACAATGAGATCCCATCTCTTGATTTTGTTAATCTCTCTCTTAATC 62
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 26 AAATCAAGGTCTTAAACAATGAGATCCCATCTCTTGATTTTGTTAATCTCTCTCTTAATC 85
Query 63 TTGAAATCTGAATCCATAAACTGCAATGAAAAGAGCCATTCCTCAGATCTAAGAGTGTTC 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 86 TTGAAATCTGAATCCATAAACTGCAATGAAAAGAGCCATTCCTCAGATCTAAGAGTGTTC 145
Query 123 CACATTAACAGTCAATGTTCTCCATTCAAAACTTCTGTCTCATGGGAAGATACACTTCTT 182
||||||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 146 CACATTAACAGTCTATGTTCTCCATTCAAAACTTCTGTTTCATGGGCAGATACACTTCTT 205
Query 183 CAAGACAAGGCTCGTTTCCTATACTTGTCAAGCCTCGCCGGCGTTAAGAAATCATCAGTC 242
||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 206 CAAGATAAGGCTCGTTTCCTATACTTGTCAAGCCTCGCTGGCGTTAGGAAATCATCAGTT 265
Query 243 CCAATCGCCTCTGGTCGCGGC-ATCGTTCAGAGCCCGACTTATATCGTGAGGGCTAACAT 301
||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||
Sbjct 266 CCAATCGCCTCTGGTCG-GGCCATCGTTCAGAGCCCGACTTACATCGTGAGGGCTAACAT 324
Query 302 CGGGACACCGGCTCAGGCCATGCTCGTGGCTCTTGACACTAGCAATGACGCTGCTTGGAT 361
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 325 CGGGACACCGGCTCAGCCCATGCTCGTGGCTCTTGACACTAGCAATGACGCTGCTTGGAT 384
Query 362 TCCTTGTTCTAGCTGCGTTGGTTGTTCTTCCTCAGTTCTCTTTGACCCTTCCAAGTCAAG 421
|||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 385 TCCTTGTTCTGGCTGCGTTGGCTGTTCTTCCTCTGTTCTCTTTGACCCTTCCAAGTCAAG 444
Query 422 CTCCTCTCGTACTCTTCAATGCGAAGCTCCTCAGTGTAAACAGGCTCCAAATCCAAGTTG 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 445 CTCCTCTCGTACTCTTCAATGCGAAGCTCCTCAGTGTAAACAGGCTCCAAATCCAAGTTG 504
Query 482 CACCGTAAGCAAATCATGTGGTTTCAACATGACCTACGGTGGTTCAGCAATCGAAGCATA 541
||| |||||||||||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 505 CACAGTAAGCAAATCATGTGGTTTCAACATGACCTACGGTGGTTCAACCATCGAAGCATA 564
Query 542 TCTGACACAAGACACACTAACATTGGCCACTGACGTCATCCCAAACTACACCTTTGGGTG 601
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 565 TCTGACACAAGACACACTAACATTGGCCAGTGACGTCATCCCAAACTACACCTTTGGGTG 624
Query 602 CATCAACAAAGCTAGTGGAACATCGTTGCCAGCGCAAGGACTCATGGGCTTAGGTCGTGG 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 625 CATCAACAAAGCTAGTGGAACATCGTTGCCAGCGCAAGGACTCATGGGCTTAGGTCGTGG 684
Query 662 TCCATTGTCTTTAATCTCACAGTCACAAAATCTTTACCAGTCTACATTCTCGTATTGCTT 721
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 685 TCCATTGTCTTTAATCTCACAGTCACAAAATCTTTATCAGTCTACATTCTCGTATTGCTT 744
Query 722 GCCTAATAGTAAGTCCAGCAATTTCTCCGGATCGCTAAGATTGGGACCTAAGAACCAACC 781
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 745 GCCTAATAGTAAGTCCAGCAATTTCTCCGGATCACTAAGATTGGGACCTAAGAACCAACC 804
Query 782 GATCCGGATCAAGACCACTCCATTGTTAAAGAACCCTAGAAGATCATCGCTTTACTATGT 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 805 GATCCGGATCAAGACCACTCCATTGTTAAAGAACCCTAGAAGATCATCGCTTTACTATGT 864
Query 842 TAACTTGGTTGGAATTCGTGTCGGGAATAAAATTGTGGATATTCCTACAAGTGCACTAGC 901
|||||||||||| ||||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 865 TAACTTGGTTGGGATTCGTGTCGGAAACAAAATTGTGGATATTCCTACAAGTGCACTCGC 924
Query 902 CTTTGATCCGGCCACCGGAGCCGGCACCATCTTTGACTCCGGGACGGTCTACACGAGGCT 961
||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 925 CTTTGATCCGGCCACCGGAGCCGGCACCATCTTTGACTCGGGGACGGTCTACACAAGGCT 984
Query 962 AGTCGAACCAGCTTACGTGGCGGTGAGAAACGAGTTCAGGCGACGAGTTAAGAACGCAAA 1021
|||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 985 AGTCGAACCAGCTTACGTGGCGGTGAGAAACGAGTTCAGGAGACGTGTTAAGAACGCAAA 1044
Query 1022 CGCAACTTCACTAGGAGGTTTCGACACATGCTACTCCGGCTCCGTCGTGTTCCCGTCGGT 1081
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 CGCAACTTCACTAGGAGGTTTCGACACATGCTACTCCGGCTCCGTCGTGTTCCCGTCGGT 1104
Query 1082 GACGTTTATGTTCGCCGGAATGAACGTGACTCTGCCTCCGGACAACCTTCTCATCCACAG 1141
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1105 GACGTTTATGTTCGCCGGAATGAACGTGACTCTGCCTCCAGACAACCTTCTCATCCACAG 1164
Query 1142 CTCCGCAGGTAACCTCAGCTGCCTCGCCATGGCTGCAGCTCCGACCAACGTTAACTCTGT 1201
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1165 CTCCGCAGGTAACCTCAGCTGCCTCGCCATGGCTGCAGCTCCGGTCAACGTTAACTCTGT 1224
Query 1202 CCTTAACGTCATCGCTAGTATGCAACAACAGAACCACCGTGTTCTCATCGACGTTCCAAA 1261
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 1225 CCTTAACGTCATCGCTAGTATGCAGCAACAGAACCACCGAGTTCTCATCGACGTTCCAAA 1284
Query 1262 TTCCAGGCTCGGCATTTCCCGTGAAACTTGCACCTAAGTTTTATCGGATT-GTGTTTT 1318
|||||||||||| ||||||||||||||||||||||||||||||||| ||| || ||||
Sbjct 1285 TTCCAGGCTCGGAATTTCCCGTGAAACTTGCACCTAAGTTTTATCG-ATTTGTATTTT 1341
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64859104140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5