BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938367
Length=1473
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54470.1 | Symbols: | uridine 5'-monophosphate synthase / U... 2433 0.0
> AT3G54470.1 | Symbols: | uridine 5'-monophosphate synthase /
UMP synthase (PYRE-F) (UMPS) | chr3:20168095-20170303 REVERSE
LENGTH=1679
Length=1679
Score = 2433 bits (1317), Expect = 0.0
Identities = 1422/1474 (96%), Gaps = 1/1474 (0%)
Strand=Plus/Plus
Query 1 CCAAAAGCAGCAGAAG-AAAAATGTCAGCCATGGAAGCACTGATTCTCCAGCTCCACGAA 59
|||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||
Sbjct 38 CCAAAAGCAGCAGAAGAAAAAATGTCAGCCATGGAAGCACTGATTCTCCAGCTGCATGAA 97
Query 60 ATCGGCGCCGTGAAATTCGGCAACTTCAAGCTCAAATCCGGAATCTTTTCTCCGGTTTAC 119
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 98 ATCGGCGCCGTGAAATTCGGCAATTTCAAGCTCAAATCTGGAATCTTTTCTCCGGTTTAC 157
Query 120 ATCGACCTCCGtctcatcgtctcttatccatccctcttaacacagatctctcaaactctc 179
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 ATCGACCTTCGTCTCATCGTCTCTTATCCATCCCTCTTAACACAGATCTCTCAAACTCTC 217
Query 180 atctcttctcttCCACCTTCCGCAACCTTCGACGTCATCTGTGGTGTCCCTTACACTGCC 239
|||||||||||||||||||| ||||||||||||||| |||||||||| |||||||||||
Sbjct 218 ATCTCTTCTCTTCCACCTTCTGCAACCTTCGACGTCGTCTGTGGTGTTCCTTACACTGCT 277
Query 240 CTCCCTATCGCCACCGTCGTCTCTGTTTCCAATGGTATCCCCATGCTTATGCGTCGCAAG 299
|||||||||||||| || ||||||||||||||||||||||| ||||||||||| || |||
Sbjct 278 CTCCCTATCGCCACTGTTGTCTCTGTTTCCAATGGTATCCCTATGCTTATGCGGCGTAAG 337
Query 300 GAGATTAAAGACTATGGAACATCCAAAGCTATTGAAGGAATCTTCGAAAAGGATCAAACT 359
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 338 GAGATTAAAGACTATGGAACATCTAAAGCTATTGAAGGAATCTTCGAAAAGGATCAAACT 397
Query 360 TGTTTGATAATCGAAGATCTTGTAACCAGTGGTGCCTCTGTTCTTGAGACTGCTGCGCCT 419
||||||||||| |||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 398 TGTTTGATAATTGAAGATCTTGTAACTAGTGGTGCTTCTGTTCTCGAGACTGCTGCTCCT 457
Query 420 CTTCGTGCTGTGGGGTTAAAGGTTAGTGACGCGGTGGTTTTGATCGATAGGCAACAAGGT 479
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 458 CTTCGTGCTGTGGGGTTAAAGGTTAGTGACGCGGTGGTTTTGATTGATAGGCAACAAGGG 517
Query 480 GGTAGGGAGAATCTGGCGGAGAATGGGATTAAGTTACATTCGATGATTATGTTAACGGAT 539
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 518 GGTAGGGAGAATCTAGCGGAGAATGGGATTAAGTTACATTCGATGATTATGTTGACGGAT 577
Query 540 ATGGTTAGGGTTTTGAAGGAAAAGGGCAAAATTGAAGAGGAGGTTGAAGTCAATTTGCTT 599
|||||||||||||||||||||||||| |||||||||| |||||||||||| |||||||||
Sbjct 578 ATGGTTAGGGTTTTGAAGGAAAAGGGGAAAATTGAAGTGGAGGTTGAAGTGAATTTGCTT 637
Query 600 AAGTTTTTGGAAGAGAATCGTAGGGTTAGTGTTCCAAGTGTGGAGAAACCGAAGCCTAAG 659
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 638 AAGTTTTTGGAAGAGAATCGTAGGGTTAGTGTTCCAAGTGTGGAGAAACCTAAGCCTAAG 697
Query 660 CCTAGGGTTTTGGGGTTCAAGGAAAGGTCTGAGCTTTCCAAGAATCCTACGGGGAAGAAG 719
|||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 698 CCTAGGGTTTTGGGGTTCAAGGAAAGGTCTGAGCTTTCTAAGAATCCGACAGGGAAGAAG 757
Query 720 CTGTTTGATATTATGTTGAAGAAGGAAACCAATCTTTGCTTAGCTGCTGATGTTGGAACT 779
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 758 CTGTTTGATATTATGTTGAAGAAGGAAACCAATCTTTGTTTAGCTGCTGATGTTGGAACT 817
Query 780 GCTGCTGAATTGCTTGACATCGCCGATAAGGTGGGACCAGAGATCTGTCTCTTGAAGACT 839
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 818 GCTGCTGAATTGCTTGACATCGCAGATAAGGTGGGACCAGAGATTTGTCTCTTGAAGACT 877
Query 840 CATGTTGATATTTTGCCTGATTTCACCCCTGACTTTGGCTCTAAACTCCGGGCGATCGCA 899
||||||||||| ||||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 878 CATGTTGATATACTGCCTGATTTCACCCCTGACTTTGGCTCTAAGCTCCGTGCGATTGCA 937
Query 900 GACAAGCACAATTTTCTCATATTTGAAGATCGCAAGTTTGCAGACATTGGTAACACTGTC 959
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 938 GACAAGCACAAATTTCTCATATTTGAGGATCGCAAGTTTGCAGACATTGGTAACACTGTC 997
Query 960 ACTATGCAGTATGAAGGAGGCATCTTTAAAATATTGGAGTGGGCTGATATTGTAAACGCT 1019
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 998 ACTATGCAGTATGAAGGAGGCATCTTTAAAATATTGGAGTGGGCTGATATTATCAACGCT 1057
Query 1020 CATATAATATCGGGGCCAGGAATCGTGGATGGCCTGAAATTGAAGGGTATGCCTCGTGGT 1079
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1058 CATGTAATATCGGGGCCAGGAATCGTGGATGGCCTGAAATTGAAGGGTATGCCTCGTGGT 1117
Query 1080 AGAGGTCTGCTTTTGCTTGCTGAAATGAGCTCTGCGGGTAACCTTGCTACAGGAGACTAC 1139
|||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1118 AGAGGTTTGCTTTTGCTTGCTGAAATGAGCTCTGCAGGTAACCTGGCTACAGGAGACTAC 1177
Query 1140 ACTGCAGCAGCCGTGAAAATCGCAGACGCTCATTCTGATTTTGTGATGGGATTCATCTCG 1199
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1178 ACTGCAGCAGCTGTGAAAATCGCAGACGCTCATTCTGATTTTGTGATGGGATTCATCTCG 1237
Query 1200 GTGAATCCGGCATCTTGGAAATGCGGATATGTGTATCCGTCTATGATTCATGCAACACCT 1259
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1238 GTGAATCCAGCATCTTGGAAATGCGGGTATGTGTATCCGTCTATGATTCATGCAACACCT 1297
Query 1260 GGTGTTCAAATGGTGAAAGGTGGTGATGCACTTGGTCAACAGTATAACACTCCACACTCT 1319
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1298 GGTGTTCAAATGGTGAAAGGTGGTGATGCACTTGGTCAGCAGTATAACACTCCACACTCT 1357
Query 1320 GTGATTACTGAGAGGGGAAGTGATATTATAATCGTGGGACGGGGAATCATAAAGGCGGAA 1379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1358 GTGATTACTGAGAGGGGAAGTGATATTATAATCGTGGGACGGGGAATCATAAAGGCGGAA 1417
Query 1380 AACCCAGCAGAGACGGCTCATGAGTATAGAGTTCAAGGATGGAATGCATACTTGGAGAAA 1439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 AACCCAGCAGAGACGGCTCATGAGTATAGAGTTCAAGGATGGAATGCATACTTGGAGAAA 1477
Query 1440 TGCTCTCAGTAGATTCGATCCTGAGAGATGGCTG 1473
||||||||||||||||||||||||||||||||||
Sbjct 1478 TGCTCTCAGTAGATTCGATCCTGAGAGATGGCTG 1511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72640188615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5