BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg938368 Length=865 Score E Sequences producing significant alignments: (Bits) Value AT3G54480.1 | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting prote... 1371 0.0 > AT3G54480.1 | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting protein 5 | chr3:20170685-20173416 REVERSE LENGTH=1114 Length=1114 Score = 1371 bits (742), Expect = 0.0 Identities = 828/869 (95%), Gaps = 7/869 (1%) Strand=Plus/Plus Query 1 TCATACTTCCTAAAGCGGCCATGGAAATT-CAAGAGATCTCAAAGCTCGACAACGAGAAA 59 |||||||||||||||||||||||| | || || |||||||||||||||||||| |||| Sbjct 72 TCATACTTCCTAAAGCGGCCATGG-AGTTACATGAGATCTCAAAGCTCGACAATAAGAAG 130 Query 60 CATCCCGAGAGAATTGTCGAATC-AAGGATGAAGAAGAGAATGAAACCTCATTCTCTCAC 118 ||||| ||||||||||| ||||| || |||||||||||||||||||||| |||||||||| Sbjct 131 CATCCAGAGAGAATTGTTGAATCGAA-GATGAAGAAGAGAATGAAACCTTATTCTCTCAC 189 Query 119 GTCTATTAACAATCTCGACGATGGTTGCCTCATGCATATCCTCAGCTTCCTATCTCCAAT 178 |||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 190 GTCTCTTAACAATCTCGACGATGGTTGCCTTATGCATATCCTCAGCTTCCTATCTCCAAT 249 Query 179 TCCAGATAGGTATAACACAGCACTCGTTTGCCACAGATGGAGATATCTGGCGTGTCACCC 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 250 TCCAGATAGGTATAACACAGCACTCGTTTGCCACAGATGGAGATATCTGGCGTGTCACCC 309 Query 239 TCGCTTGTGGCTCCGTGTTGACCGTTTTGTTAAGGATTTATCTCAGCCTGGAGTTTTCCA 298 |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 310 TCGCTTGTGGCTCCGTGTTGACCGTTTTGTCAAGGATTTATCTCAGCCTGGAGTTTTCCT 369 Query 299 CAACATTGAGTCAGCTGTATCTGCAGCAAGACCCGGCGATACCATTTTAATAGGAGCCGG 358 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 370 CAACATTGAGTCAGCTGTATCTGCAGCAAGACCCGGCGATACCATTTTAATAGTAGCCGG 429 Query 359 TGGCAA-TCATCGTGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTGGTCGGCGGGG 417 ||| || | |||| ||||||||||||||||||||||||||||||||||||||||| || | Sbjct 430 TGGGAACT-ATCGCGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTGGTCGGTGGAG 488 Query 418 GCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGTGCCCTGGAAT 477 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 489 GCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGTGCCCTGGAAC 548 Query 478 TGCTATCGACCTGCAAGCTTGCGAATTTAACAGTCAAAGCAGAGCTCGGGTGCTGTTTGC 537 || |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 549 TGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGCAGAGCTCGGGTGCTGTTTGC 608 Query 538 TTCATAGGAGTGGAAGGGTAACGATTGATGGATGTGTGCTTCAATGTGAGACAAACCCTT 597 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 609 TTCATAGGAGTGGAAGGCTAACGATTGATGGATGTGTGCTTCAATGTGAGACAAACCCTT 668 Query 598 TGGATCATCTCTCATGCCCAATCGTGAGCACTGCTGGAGATGAAGACATTGAAGATATCT 657 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 669 TGGATCATCTCTCATGCCCAATCGTGAGCACTGCTGGAGATGAAGACATTGAAAATATCT 728 Query 658 TGAGCCATGTGGAAGTGAAAGAAACTGTTGCTGAAAAGATTAAAGCAAACAGTGTAACAG 717 | ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| | Sbjct 729 TAAGCCATGTGGAAGTGAAAGAAACTGTTACTGGAAAGATTAAAGCAAACAGTGTAACCG 788 Query 718 TTTTGCAGACAAGGATCGAGGGAGGTGCAAAGGCTGTTTCGACTAGTGGAGACTTGGTTC 777 ||||||||||||| |||||||||||||||||||||||||| || || ||||||||||||| Sbjct 789 TTTTGCAGACAAGAATCGAGGGAGGTGCAAAGGCTGTTTCAACAAGGGGAGACTTGGTTC 848 Query 778 TGCAGCGTGTTCGAGTCATGTATTCCAAGGCTTACCTCTATTTCTGGTTTGATGTAGATT 837 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 849 TGCAGCGTGTTCGAGTCATGTATTCCAAGGCTTACCTCTATTTCTGGTTTGATGTAGATT 908 Query 838 ATCAATGATCTTTGCTGAtttt-tttATT 865 || |||||| ||||||| |||| |||||| Sbjct 909 ATGAATGATTTTTGCTGGTTTTATTTATT 937 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42196683480 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5