BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938368
Length=865
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54480.1 | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting prote... 1371 0.0
> AT3G54480.1 | Symbols: SKIP5, SKP5 | SKP1/ASK-interacting protein
5 | chr3:20170685-20173416 REVERSE LENGTH=1114
Length=1114
Score = 1371 bits (742), Expect = 0.0
Identities = 828/869 (95%), Gaps = 7/869 (1%)
Strand=Plus/Plus
Query 1 TCATACTTCCTAAAGCGGCCATGGAAATT-CAAGAGATCTCAAAGCTCGACAACGAGAAA 59
|||||||||||||||||||||||| | || || |||||||||||||||||||| ||||
Sbjct 72 TCATACTTCCTAAAGCGGCCATGG-AGTTACATGAGATCTCAAAGCTCGACAATAAGAAG 130
Query 60 CATCCCGAGAGAATTGTCGAATC-AAGGATGAAGAAGAGAATGAAACCTCATTCTCTCAC 118
||||| ||||||||||| ||||| || |||||||||||||||||||||| ||||||||||
Sbjct 131 CATCCAGAGAGAATTGTTGAATCGAA-GATGAAGAAGAGAATGAAACCTTATTCTCTCAC 189
Query 119 GTCTATTAACAATCTCGACGATGGTTGCCTCATGCATATCCTCAGCTTCCTATCTCCAAT 178
|||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 190 GTCTCTTAACAATCTCGACGATGGTTGCCTTATGCATATCCTCAGCTTCCTATCTCCAAT 249
Query 179 TCCAGATAGGTATAACACAGCACTCGTTTGCCACAGATGGAGATATCTGGCGTGTCACCC 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TCCAGATAGGTATAACACAGCACTCGTTTGCCACAGATGGAGATATCTGGCGTGTCACCC 309
Query 239 TCGCTTGTGGCTCCGTGTTGACCGTTTTGTTAAGGATTTATCTCAGCCTGGAGTTTTCCA 298
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 310 TCGCTTGTGGCTCCGTGTTGACCGTTTTGTCAAGGATTTATCTCAGCCTGGAGTTTTCCT 369
Query 299 CAACATTGAGTCAGCTGTATCTGCAGCAAGACCCGGCGATACCATTTTAATAGGAGCCGG 358
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 370 CAACATTGAGTCAGCTGTATCTGCAGCAAGACCCGGCGATACCATTTTAATAGTAGCCGG 429
Query 359 TGGCAA-TCATCGTGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTGGTCGGCGGGG 417
||| || | |||| ||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 430 TGGGAACT-ATCGCGTTTCTAATATTCAGATTAAAAAGCCTCTTTGCCTGGTCGGTGGAG 488
Query 418 GCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGTGCCCTGGAAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 489 GCGAGATTCCTGATGAAACCACCCTCGTCTGTGCTCGTGGTTCAGACAGTGCCCTGGAAC 548
Query 478 TGCTATCGACCTGCAAGCTTGCGAATTTAACAGTCAAAGCAGAGCTCGGGTGCTGTTTGC 537
|| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 549 TGTTATCAACCTGCAAGCTTGCGAATTTAACAGTAAAAGCAGAGCTCGGGTGCTGTTTGC 608
Query 538 TTCATAGGAGTGGAAGGGTAACGATTGATGGATGTGTGCTTCAATGTGAGACAAACCCTT 597
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 609 TTCATAGGAGTGGAAGGCTAACGATTGATGGATGTGTGCTTCAATGTGAGACAAACCCTT 668
Query 598 TGGATCATCTCTCATGCCCAATCGTGAGCACTGCTGGAGATGAAGACATTGAAGATATCT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 669 TGGATCATCTCTCATGCCCAATCGTGAGCACTGCTGGAGATGAAGACATTGAAAATATCT 728
Query 658 TGAGCCATGTGGAAGTGAAAGAAACTGTTGCTGAAAAGATTAAAGCAAACAGTGTAACAG 717
| ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| |
Sbjct 729 TAAGCCATGTGGAAGTGAAAGAAACTGTTACTGGAAAGATTAAAGCAAACAGTGTAACCG 788
Query 718 TTTTGCAGACAAGGATCGAGGGAGGTGCAAAGGCTGTTTCGACTAGTGGAGACTTGGTTC 777
||||||||||||| |||||||||||||||||||||||||| || || |||||||||||||
Sbjct 789 TTTTGCAGACAAGAATCGAGGGAGGTGCAAAGGCTGTTTCAACAAGGGGAGACTTGGTTC 848
Query 778 TGCAGCGTGTTCGAGTCATGTATTCCAAGGCTTACCTCTATTTCTGGTTTGATGTAGATT 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 TGCAGCGTGTTCGAGTCATGTATTCCAAGGCTTACCTCTATTTCTGGTTTGATGTAGATT 908
Query 838 ATCAATGATCTTTGCTGAtttt-tttATT 865
|| |||||| ||||||| |||| ||||||
Sbjct 909 ATGAATGATTTTTGCTGGTTTTATTTATT 937
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42196683480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5