BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938375

Length=678
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G61540.1 | Symbols:  | Galactose oxidase/kelch repeat superf...  54.7    1e-06


> AT1G61540.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr1:22702498-22703706 FORWARD LENGTH=1209
Length=1209

 Score = 54.7 bits (29),  Expect = 1e-06
 Identities = 104/139 (75%), Gaps = 10/139 (7%)
 Strand=Plus/Plus

Query  474   GAGAGTTAAAATGGTATGACACTGAGGTAAGAATGTGG-AGAAATTTGGAGGGT-TTGGC  531
             ||| ||| ||||||||||||  | |||||||  ||||| || || ||| | ||| || | 
Sbjct  908   GAGTGTTCAAATGGTATGACTTTAAGGTAAGTTTGTGGAAGGAA-TTGAATGGTGTT-GA  965

Query  532   AGGACTACCTAAGTTCCCTCAGGGT-GCTAATGTTAGATTGGCT-AAT-TATGGTGGAAA  588
             |||| | ||| | ||   | |  || | | |||||| | ||| |  || | |||||||||
Sbjct  966   AGGATTGCCTGATTTAAGTGACCGTGGGT-ATGTTAAAATGG-TGGATCT-TGGTGGAAA  1022

Query  589   GATAGCGGTTTTGTGGCAA  607
             |||||||||||||||||||
Sbjct  1023  GATAGCGGTTTTGTGGCAA  1041



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 32802897991


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5