BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938376
Length=2044
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54540.1 | Symbols: ATGCN4, GCN4 | general control non-repre... 643 0.0
> AT3G54540.1 | Symbols: ATGCN4, GCN4 | general control non-repressible
4 | chr3:20189805-20192792 FORWARD LENGTH=2500
Length=2500
Score = 643 bits (348), Expect = 0.0
Identities = 555/654 (85%), Gaps = 17/654 (3%)
Strand=Plus/Plus
Query 1329 CCAGAACCAACCGAGCTCAGTACTGATTCTCTTTTGGAACTAATTGATGTTTGCTTTTGT 1388
||||||||||| |||||| ||| | ||||| || | ||||||| ||| |||| |
Sbjct 1556 CCAGAACCAACTGAGCTC---ACTCCTCCTCTTCTGCAGTTAATTGAGGTTAGCTTCAGC 1612
Query 1389 TACCCCAACAGGACAGATTTCAGGCTATTAAATGTTGATGTATGTATCGATATGGAGACA 1448
|| ||||||||| |||||||||| || | |||||||||||| |||||||||||| ||||
Sbjct 1613 TATCCCAACAGGCCAGATTTCAGACTCTCGAATGTTGATGTAGGTATCGATATGGGGACA 1672
Query 1449 CGGGTTGCGATAGTTGGGCCAAATGGAGCAGGAAAGTCCACTCTTA-TGAATCTTCTTGC 1507
|||||||||||||||||||| || ||||||||||||||||||| || | |||||||||||
Sbjct 1673 CGGGTTGCGATAGTTGGGCCTAACGGAGCAGGAAAGTCCACTC-TATTAAATCTTCTTGC 1731
Query 1508 AGGAGAACTAGATCCAACGGAGGGTGAAGTGATAAGAAGCCAGAAGCTGAGGATTGGGAG 1567
||||| ||| |||||| ||||||||| ||| |||||||||||||||||||||||| ||
Sbjct 1732 GGGAGATTTAGTTCCAACAGAGGGTGAAATGAGAAGAAGCCAGAAGCTGAGGATTGGCAG 1791
Query 1568 GTATTCTCAGCACTTTGTTGACGGCTTAACAATGGAGGAAACACCCGTTGAGTATCTTCT 1627
|||||||||||| ||||||||| |||||||||| ||||||||| ||| ||||||| ||
Sbjct 1792 GTATTCTCAGCATTTTGTTGACCTTTTAACAATGGGGGAAACACCGGTTCAGTATCTCCT 1851
Query 1628 TCGCCTTTATTCTGACCAAGAGGAATTCAGCAAGCCAAG-TGTGGTGCGTGCAAAACT-G 1685
||| ||| || |||||||||||| ||| |||||| |||| | ||||| || || || |
Sbjct 1852 TCGTCTTCATCCTGACCAAGAGGGATTTAGCAAG-CAAGAGGCAGTGCGAGCGAAGCTAG 1910
Query 1686 GCCAAGTTTGGGCTA-AAAGGTCGCAACT-ACGTAACTCCAATTTCGAAACTGTCTGGGG 1743
| ||||||||||||| || ||| ||| | || || |||||||| ||||| ||||||| |
Sbjct 1911 G-CAAGTTTGGGCTACCAA-GTCACAA-TCACTTATCTCCAATTGCGAAATTGTCTGGAG 1967
Query 1744 GCCAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCGAAGCCACACATTTTACTTC 1803
| |||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 1968 GACAAAAGGCTAGGGTTGTGTTCACCTCGATCTCAATGTCAAAACCACACATTTTGCTTC 2027
Query 1804 TTGACGAGCCAACAAATCACTTAGACATTG-AGAGTATAGATGCGTTGGCGAGA-GCATT 1861
| |||||||| ||||||||||||||||| | ||||||||||||| |||||| || ||| |
Sbjct 2028 TGGACGAGCCTACAAATCACTTAGACAT-GCAGAGTATAGATGCCTTGGCG-GATGCACT 2085
Query 1862 AGATGAGTTCACAGGAGGAGTTGTGTTGGTGAGTCACGACTCGGGTTTCGTATCGCGTGT 1921
||||||||||||||| ||||||||||||||||||||||||||| | || |||| |||||
Sbjct 2086 AGATGAGTTCACAGGTGGAGTTGTGTTGGTGAGTCACGACTCGAGACTCATATCACGTGT 2145
Query 1922 CTGTAAGGATGAAGTTAATAGGGAAATTTGGGTTGTAGAAGACGGAACAGTGAA 1975
||| ||| || | || || |||||||||||||||||||||||||||||||
Sbjct 2146 ATGTGCGGAAGAGGAGAAGAGTCAAATTTGGGTTGTAGAAGACGGAACAGTGAA 2199
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 101304699810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5