BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938381
Length=424
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54580.1 | Symbols: | Proline-rich extensin-like family pro... 387 6e-107
AT3G54590.1 | Symbols: ATHRGP1, HRGP1 | hydroxyproline-rich gly... 353 6e-97
AT1G23720.1 | Symbols: | Proline-rich extensin-like family pro... 237 6e-62
AT5G35190.1 | Symbols: | proline-rich extensin-like family pro... 233 8e-61
AT3G28550.1 | Symbols: | Proline-rich extensin-like family pro... 204 7e-52
> AT3G54580.1 | Symbols: | Proline-rich extensin-like family protein
| chr3:20200688-20203782 REVERSE LENGTH=3095
Length=3095
Score = 387 bits (209), Expect = 6e-107
Identities = 314/364 (86%), Gaps = 10/364 (3%)
Strand=Plus/Plus
Query 45 ATGGGGCCTTCCACCCATCTCATTTGCGCTCTAGGAGTTATCATCATGGCAACAATGGTT 104
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1 ATGGGGCCTTCAACCCATCTCATTTGCGCTCTAGGAGTTGTCATCATGGCAACAATGGTT 60
Query 105 GCTGCATATGAACCATACACAGATAGTTCTCCACCACCATTGTATTCTTCACCGCTTCCT 164
||||||||||| |||||||||||||| |||||||||||| ||||||| ||||||||||||
Sbjct 61 GCTGCATATGATCCATACACAGATAGCTCTCCACCACCACTGTATTCCTCACCGCTTCCT 120
Query 165 AAGGTTGAATACAAAACTCCCCCACTACCATATGTCGATAGTTCTCCACCACCCCCATAC 224
||| |||||||||||||||||||||||||||| |||| ||||| |||||||| | |||
Sbjct 121 AAGATTGAATACAAAACTCCCCCACTACCATACATCGACAGTTCCCCACCACCAACTTAC 180
Query 225 T-ACTCGCCTTCCCCTAAGGTAGATTACAAGTCTCCTCCACCACCATACGTATACAGCTC 283
| || || || || ||| |||| ||||| ||||||||||||||||| || ||||||||
Sbjct 181 TCAC-CGGCT-CCTG-AAG-TAGAATACAAATCTCCTCCACCACCATATGTTTACAGCTC 236
Query 284 CCCACCACCACCTTAT-TACTCTCCTTCTCCAAAGGTTGAGTACAAGTCTCCTCCACCAC 342
||||||||||| | |||||||| || ||||||||||||||||| |||||||||||||
Sbjct 237 ACCACCACCACCG-ACCTACTCTCCATCCCCAAAGGTTGAGTACAAATCTCCTCCACCAC 295
Query 343 CATATGTTTACAAATCTCCACCTCCACCATCGTATTCACCTTCTCCAAAA-TCTGAGTAC 401
| ||||| |||| || ||||| |||||| | || || || || ||||| | |||||||
Sbjct 296 CGTATGTCTACAGCTCCCCACCACCACCAACCTACTCTCCATCCCCAAAGGT-TGAGTAC 354
Query 402 TAAA 405
|||
Sbjct 355 -AAA 357
> AT3G54590.1 | Symbols: ATHRGP1, HRGP1 | hydroxyproline-rich glycoprotein
| chr3:20206160-20208472 FORWARD LENGTH=2163
Length=2163
Score = 353 bits (191), Expect = 6e-97
Identities = 332/397 (84%), Gaps = 21/397 (5%)
Strand=Plus/Plus
Query 1 GTTGGTA-AAGAATAAA-CAAAATC-TCAATGAGATCTTCTTC-AAGGATGGGGCCTTCC 56
||||||| || || ||| ||||||| | ||||||||||||||| || ||||||||||| |
Sbjct 38 GTTGGTACAA-AA-AAAGCAAAATCAT-AATGAGATCTTCTTCTAA-GATGGGGCCTT-C 92
Query 57 A-CCCATCTCATTTGCGCTCTAGGAGTTATCATCATGGCAACAATGGTTGCTGCATATGA 115
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 93 AGCCCATCTCATTTCCGCTCTAGGAGTTATCATCATGGCAACAATGGTTGCTGCATATGA 152
Query 116 ACCATACACAGATAGT-TCTCCACCACCATTGTATTCTTCACCGCTTCCT-AAGGTTGAA 173
||| | ||| || | ||||| ||||| ||||||||||||||||||||| ||| |||||
Sbjct 153 GCCAGAAACATAT-GCCTCTCCGCCACCGTTGTATTCTTCACCGCTTCCTGAAG-TTGAA 210
Query 174 TACAAAACTCCCCCACTACCATATGTCGATAGTTCTCCACCACCCCCATACTACTCGCCT 233
||||| ||||| ||||||||||| ||||| ||||| |||||||| | ||| || | |
Sbjct 211 TACAAGACTCCTCCACTACCATACGTCGACAGTTCCCCACCACCAACTTAC-ACAC-CAG 268
Query 234 TCCCCT-AAGGTAGATTACAAGTCTCCTCCACCACCATACGTATACAGCTCCCCACCACC 292
| ||| ||| | || ||||||||||| ||||||||||| || || || || ||||| ||
Sbjct 269 -CTCCTGAAG-TGGAATACAAGTCTCCACCACCACCATATGTCTATAGTTCTCCACCCCC 326
Query 293 ACCTT-ATTACTCTCCTTCTCCAAAGGTTGAGTACAAGTCTCCTCCACCACCATATGTTT 351
||| || |||| || |||||||||||||| ||||| ||||||||||||||||| || |
Sbjct 327 ACCAACAT-ACTCCCCATCTCCAAAGGTTGACTACAAATCTCCTCCACCACCATACGTCT 385
Query 352 ACAAATCTCCACCTCCACCATCGTATTCACCTTCTCC 388
||| |||||||| ||||||| || || ||||||||
Sbjct 386 ACAGTTCTCCACCACCACCATATTACTCGCCTTCTCC 422
Score = 250 bits (135), Expect = 8e-66
Identities = 224/267 (84%), Gaps = 6/267 (2%)
Strand=Plus/Plus
Query 129 AGTTCTCCACCACCATTGTATT-CTTCACCGCT-TCCTAAGGTTGAATACAAAACTCCCC 186
||||||||||||||| |||| | || || | ||||||||| || ||||| |||| |
Sbjct 388 AGTTCTCCACCACCACCATATTAC-TCGCC-TTCTCCTAAGGTCGACTACAAGTCTCCTC 445
Query 187 CACTACCATATGTCGATAGTTCTCCACCACCCCCATACTACTCGCCTTCCCCTAAGGTAG 246
||| |||||| ||| | | ||||||||||| ||||| |||||||||||||||||||| |
Sbjct 446 CACCACCATACGTCTACAACTCTCCACCACCACCATATTACTCGCCTTCCCCTAAGGTTG 505
Query 247 ATTACAAGTCTCCTCCACCACCATACGTATACAGCTCCCCACCACCACCTTATTACTCTC 306
| ||||||||||||||||||||||||||||||||||||||||||||||| || || ||||
Sbjct 506 ACTACAAGTCTCCTCCACCACCATACGTATACAGCTCCCCACCACCACCATACTATTCTC 565
Query 307 CTTCTCCAAAGGTTGAGTACAAGTCTCCTCCACCACCATATGTTTACAAATCTCCACCTC 366
| || || |||||||||||||| |||||||| ||||| || ||||||| |||||||| |
Sbjct 566 CATCCCCTAAGGTTGAGTACAAATCTCCTCCTCCACCGTACGTTTACAGTTCTCCACCAC 625
Query 367 CACCAT-CGTATTCACCTTCTCCAAAA 392
|||||| | || ||||| || || |||
Sbjct 626 CACCATAC-TACTCACCATCCCCTAAA 651
Score = 154 bits (83), Expect = 7e-37
Identities = 181/225 (80%), Gaps = 19/225 (8%)
Strand=Plus/Plus
Query 132 TCTCCACCACCA-TTGTATT-CTTCACCGCTT--CCTAAGGT-TGAATACAAAACTCCC- 185
|||||||||||| | |||| | ||| | ||| |||||||| | | |||||| | |||
Sbjct 1864 TCTCCACCACCACCT-TATTAC-TCA-C-CTTCCCCTAAGGTAT-ACTACAAATC-CCCA 1917
Query 186 CCAC-TAC-CA--TATGTCGATAGTTCTCCACCACCCCCATACTACTCGCCTTCCCCTAA 241
|||| | | || ||||| | | || | |||||||| |||| || || || ||||||||
Sbjct 1918 CCACATCCTCATGTATGT-GTTTGTCCACCACCACCTCCATGTTATTCTCCATCCCCTAA 1976
Query 242 GGTAGAT-TACAAGTCTCCTCCACCACCATACGTATACAGCTCCCCACCACCACCTTATT 300
||| | | ||||||||||||||||||||||| || |||| |||||||||||||| || |
Sbjct 1977 GGTTG-TGTACAAGTCTCCTCCACCACCATATGTCTACAATTCCCCACCACCACCATACT 2035
Query 301 ACTCTCCTTCTCCAAAGGTTGAGTACAAGTCTCCTCCACCACCAT 345
|||| ||||||||||| ||| | ||||||||||||||||||||||
Sbjct 2036 ACTCACCTTCTCCAAAAGTTTACTACAAGTCTCCTCCACCACCAT 2080
> AT1G23720.1 | Symbols: | Proline-rich extensin-like family protein
| chr1:8388655-8391540 FORWARD LENGTH=2886
Length=2886
Score = 237 bits (128), Expect = 6e-62
Identities = 235/285 (82%), Gaps = 14/285 (5%)
Strand=Plus/Plus
Query 129 AGTTCTCCACCACCATTGTATT-CTTCACC-GCTTCCTAAGGTTGA-ATACAAAACTCCC 185
||||||||||||||| |||| | ||||| || |||||| | | ||||||| ||||
Sbjct 2071 AGTTCTCCACCACCACCATATTAC-TCACCTGC-TCCTAA-GCCCACATACAAATCTCCA 2127
Query 186 CCACTACCATATGTCGATAGTTCTCCACCACCCCCATACTACTCGCCTTCCCCTAAG-GT 244
|||| |||||| || | || || |||||||| |||||||||||||||||||||||| |
Sbjct 2128 CCACCACCATACGTTTACAGCTCCCCACCACCACCATACTACTCGCCTTCCCCTAAGCCT 2187
Query 245 AGATTACAAGTCTCCTCCACCACCATACGTATACAG--CTCC-CCACCACCACCTTATTA 301
| | ||||| ||||| ||||| ||||| ||||| || |||| || ||||||||||||||
Sbjct 2188 ACA-TACAAATCTCCACCACCTCCATATGTATATAGCTCTCCACCTCCACCACCTTATTA 2246
Query 302 CTCTCCTTCTCCAAAGGTTGAGTACAAGTCTCCTCCACCACCATATGTTTACAAATCTCC 361
||||||||||||||||||||||||||| ||||| |||||||||||||| |||| |||||
Sbjct 2247 CTCTCCTTCTCCAAAGGTTGAGTACAAATCTCCGCCACCACCATATGTCTACAGTTCTCC 2306
Query 362 ACCTCCACCATCGTATTCACCTTCTCCAAAA-TCTGAGTACTAAA 405
|| ||||||| || || ||||||||||| | ||||||| |||
Sbjct 2307 TCCCCCACCATATTACTCTCCTTCTCCAAAGGT-TGAGTAC-AAA 2349
Score = 206 bits (111), Expect = 2e-52
Identities = 198/239 (83%), Gaps = 10/239 (4%)
Strand=Plus/Plus
Query 161 TCCTAAGGTTGAATACAAAACTCCCCCACTACCATATGTCGATAGTTCTCCACCACCC-C 219
||| |||||||| |||||| |||| |||| |||||||||| | |||||||| || ||| |
Sbjct 2256 TCCAAAGGTTGAGTACAAATCTCCGCCACCACCATATGTCTACAGTTCTCCTCC-CCCAC 2314
Query 220 CATACTACTCGCCTTCCCCTAAGGTAGATTACAAGTCTCCTCCACCACCATACGTATACA 279
|||| ||||| ||||| || ||||| || ||||| |||||||| ||||| || || || |
Sbjct 2315 CATATTACTCTCCTTCTCCAAAGGTTGAGTACAAATCTCCTCCTCCACCGTATGTTTATA 2374
Query 280 G--CTCC-CCACCACCACCTTATTACTCTCCTTCTCCAAAGGTTGAGTACAAGTCTCCTC 336
| |||| || |||||||| |||||||||||||||||||||||||||||||| || ||||
Sbjct 2375 GTTCTCCACCTCCACCACCATATTACTCTCCTTCTCCAAAGGTTGAGTACAAATCCCCTC 2434
Query 337 CACCACCATATGTTTACAAATCTCCACCTCCACC-ATCGTATT---CACCTTCTCCAAA 391
||||||| ||||| |||| || ||||| ||||| | |||||| | |||||||||||
Sbjct 2435 CACCACCGTATGTCTACAGCTCCCCACCACCACCCA-CGTATTATTCTCCTTCTCCAAA 2492
Score = 196 bits (106), Expect = 1e-49
Identities = 198/241 (82%), Gaps = 11/241 (5%)
Strand=Plus/Plus
Query 173 ATACAAAACTCCCCCA-CTACCATATGTCGATAGTTCTCCA---CCACCCCCATACTACT 228
||||||| |||| ||| || |||||||| |||| |||||| ||||| || || ||||
Sbjct 2190 ATACAAATCTCCACCACCT-CCATATGTATATAGCTCTCCACCTCCACCACCTTATTACT 2248
Query 229 CGCCTTCCCCTAAGGTAGATTACAAGTCTCCTCCACCACCATACGTATACAGCTCCCCAC 288
| ||||| || ||||| || ||||| ||||| ||||||||||| || ||||| || || |
Sbjct 2249 CTCCTTCTCCAAAGGTTGAGTACAAATCTCCGCCACCACCATATGTCTACAGTTCTCCTC 2308
Query 289 CACCACCTTATTACTCTCCTTCTCCAAAGGTTGAGTACAAGTCTCCTCCACCACCATATG 348
| ||||| |||||||||||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 2309 CCCCACCATATTACTCTCCTTCTCCAAAGGTTGAGTACAAATCTCCTCCTCCACCGTATG 2368
Query 349 TTTACAAATCTCCACCTCCACCATCGTATT-CAC-C-TTCTCCAAAA-TCTGAGTACTAA 404
|||| | ||||||||||||||| | |||| | | | ||||||||| | ||||||| ||
Sbjct 2369 TTTATAGTTCTCCACCTCCACCACCATATTACTCTCCTTCTCCAAAGGT-TGAGTAC-AA 2426
Query 405 A 405
|
Sbjct 2427 A 2427
> AT5G35190.1 | Symbols: | proline-rich extensin-like family protein
| chr5:13434181-13435167 FORWARD LENGTH=987
Length=987
Score = 233 bits (126), Expect = 8e-61
Identities = 219/264 (83%), Gaps = 6/264 (2%)
Strand=Plus/Plus
Query 132 TCTCCACCACCA-TTGTATT-CTTCACCGCT-TCCTAAGGTTGAATACAAAACTCCCCCA 188
|||||||||||| | |||| | || || | ||| |||| || ||||| |||| |||
Sbjct 241 TCTCCACCACCACCT-TATTAC-TCTCC-TTCTCCAAAGGAAGACTACAAGTCTCCACCA 297
Query 189 CTACCATATGTCGATAGTTCTCCACCACCCCCATACTACTCGCCTTCCCCTAAGGTAGAT 248
| |||||||||| | | ||||||||||| || || ||||| ||||| ||||| |||||
Sbjct 298 CCACCATATGTCTACAACTCTCCACCACCACCGTATTACTCCCCTTCTCCTAAAGTAGAC 357
Query 249 TACAAGTCTCCTCCACCACCATACGTATACAGCTCCCCACCACCACCTTATTACTCTCCT 308
||||| |||||||||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 358 TACAAATCTCCTCCACCACCATACGTCTACAACTCTCCACCACCACCTTATTACTCTCCT 417
Query 309 TCTCCAAAGGTTGAGTACAAGTCTCCTCCACCACCATATGTTTACAAATCTCCACCTCCA 368
||||||||||| || ||||||||||| |||||||||||||| ||||| |||||||| |||
Sbjct 418 TCTCCAAAGGTAGAATACAAGTCTCCACCACCACCATATGTCTACAACTCTCCACCACCA 477
Query 369 CCATCGTATTCACCTTCTCCAAAA 392
|| | || || | |||||| |||
Sbjct 478 CCTTATTACTCTCTTTCTCCTAAA 501
Score = 228 bits (123), Expect = 4e-59
Identities = 218/264 (83%), Gaps = 6/264 (2%)
Strand=Plus/Plus
Query 132 TCTCCACCACCA-TTGTATT-CTTCACCGCT-TCCTAAGGTTGAATACAAAACTCCCCCA 188
|||||||||||| | |||| | || || | ||| ||||| |||||||| |||| |||
Sbjct 391 TCTCCACCACCACCT-TATTAC-TCTCC-TTCTCCAAAGGTAGAATACAAGTCTCCACCA 447
Query 189 CTACCATATGTCGATAGTTCTCCACCACCCCCATACTACTCGCCTTCCCCTAAGGTAGAT 248
| |||||||||| | | ||||||||||| || || ||||| | ||| ||||| |||||
Sbjct 448 CCACCATATGTCTACAACTCTCCACCACCACCTTATTACTCTCTTTCTCCTAAAGTAGAC 507
Query 249 TACAAGTCTCCTCCACCACCATACGTATACAGCTCCCCACCACCACCTTATTACTCTCCT 308
||||||||||| |||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct 508 TACAAGTCTCCACCACCACCATACGTCTACAACTCTCCACCACCACCTTATTACTCTCCT 567
Query 309 TCTCCAAAGGTTGAGTACAAGTCTCCTCCACCACCATATGTTTACAAATCTCCACCTCCA 368
||||||||||| || ||||||| | | ||||||||||| || ||||| |||||| | |||
Sbjct 568 TCTCCAAAGGTAGACTACAAGTTTTCACCACCACCATACGTCTACAACTCTCCATCACCA 627
Query 369 CCATCGTATTCACCTTCTCCAAAA 392
|||| || || |||||||| |||
Sbjct 628 CCATATTACTCTCCTTCTCCTAAA 651
Score = 130 bits (70), Expect = 1e-29
Identities = 98/112 (88%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 281 CTCCCCACCACCACCTTATTACTCTCCTTCTCCAAAGGTTGAGTACAAGTCTCCTCCACC 340
||| |||||||||||||||||||||||||||||||||| || ||||||||||| |||||
Sbjct 240 CTCTCCACCACCACCTTATTACTCTCCTTCTCCAAAGGAAGACTACAAGTCTCCACCACC 299
Query 341 ACCATATGTTTACAAATCTCCACCTCCACCATCGTATTCACCTTCTCCAAAA 392
||||||||| ||||| |||||||| ||||| | || || |||||||| |||
Sbjct 300 ACCATATGTCTACAACTCTCCACCACCACCGTATTACTCCCCTTCTCCTAAA 351
> AT3G28550.1 | Symbols: | Proline-rich extensin-like family protein
| chr3:10700707-10703929 REVERSE LENGTH=3223
Length=3223
Score = 204 bits (110), Expect = 7e-52
Identities = 159/183 (87%), Gaps = 2/183 (1%)
Strand=Plus/Plus
Query 207 TCTCCACCACCCCCATACTACTCGCCTTCCCCTAAGGTAGATTACAAGTCTCCTCCACCA 266
||||||||||| |||||||| || || || ||||| || || ||||||||||||||||||
Sbjct 211 TCTCCACCACCACCATACTATTCACCATCTCCTAAAGTTGAGTACAAGTCTCCTCCACCA 270
Query 267 CCATACGTATACAGCTCCCCACCACCACCTTATTACTCTCCTTCTCCAAAGGTTGAGTAC 326
||||| || |||| ||| ||||||||||| ||||||||||| || |||||||| || |||
Sbjct 271 CCATATGTCTACAACTCTCCACCACCACCATATTACTCTCCATCCCCAAAGGTAGACTAC 330
Query 327 AAGTCTCCTCCACCACCATATGTTTACAAATCTCCACCTCCACCA-TCGTATTCACCTTC 385
|||||||||||||||||||||||||||| || ||||| |||||| || |||||||| ||
Sbjct 331 AAGTCTCCTCCACCACCATATGTTTACAGTTCGCCACCACCACCAATC-TATTCACCATC 389
Query 386 TCC 388
|||
Sbjct 390 TCC 392
Score = 193 bits (104), Expect = 1e-48
Identities = 190/232 (82%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 162 CCTAAGGTTGAATACAAAACTCCCCCACTACCATATGTCGATAGTTCTCCACCACCCCCA 221
|||||||| || |||||| |||| || | ||||||||| | |||||||| ||||| |||
Sbjct 1291 CCTAAGGTAGACTACAAATCTCCTCCTCCACCATATGTTTACAGTTCTCCTCCACCACCA 1350
Query 222 TACTACTCGCCTTCCCCTAAGGTAGAT-TACAAGTCTCCTCCACCACCATACGTATACAG 280
||||||||||| || || ||||| | | ||||| |||||||| |||||||| || |||||
Sbjct 1351 TACTACTCGCCATCTCCAAAGGTTG-TATACAAATCTCCTCCTCCACCATATGTTTACAG 1409
Query 281 CTCCCCACCACCACCTTATTACTCTCCTTCTCCAAAGGTTGAGTACAAGTCTCCTCCACC 340
|| || |||||||| || || || || || || ||||| || |||||||||||||||||
Sbjct 1410 TTCTCCTCCACCACCATACTATTCACCATCCCCTAAGGTAGACTACAAGTCTCCTCCACC 1469
Query 341 ACCATATGTTTACAAATCTCCACCTCCACCAT-CGTATTCACCTTCTCCAAA 391
|||||||||||||| |||||||| ||||| | | || || ||||| |||||
Sbjct 1470 ACCATATGTTTACAGTTCTCCACCACCACCGTAC-TACTCTCCTTCACCAAA 1520
Score = 183 bits (99), Expect = 9e-46
Identities = 192/236 (81%), Gaps = 9/236 (4%)
Strand=Plus/Plus
Query 45 ATGGGGCCTTCCACCCATCTCATTTGCGCTCTAGGAGTTATCATCATGGCAACAATGGTT 104
||||||||||| |||||||| | | |||| |||||||||||||||||||||||||||||
Sbjct 1 ATGGGGCCTTCTGCCCATCTCGTCTACGCTATAGGAGTTATCATCATGGCAACAATGGTT 60
Query 105 GCTGCATATGAACCATACACAGATAGTTCTCCACCACCATTGTATTCT-TCACCGCTTCC 163
|| |||||||| |||||||||||||| || || ||||||| | ||| | || |||||
Sbjct 61 GCGGCATATGAGCCATACACAGATAGCTCACCTCCACCAT---ACTCTGTG-CCACTTCC 116
Query 164 TAAGGTTGAATACAAAACTCCCCCACTACCATATGTCGATAGTTCTCCACCACCCCCA-T 222
|| || ||||||||| |||| ||| ||||| |||| | |||||||||||||| ||| |
Sbjct 117 CAAAGTGGAATACAAATCTCCTCCATTACCAGATGTTTACAGTTCTCCACCACCACCACT 176
Query 223 AC--TACTCGCCTTCCCCTAAGGTAGATTACAAGTCTCCTCCACCACCATACGTAT 276
| ||||| || | ||||| || ||||| || ||||| |||||||||||| |||
Sbjct 177 AGAATACTCTCCAGCGCCTAAAGTTGATTATAAATCTCCACCACCACCATAC-TAT 231
Score = 110 bits (59), Expect = 1e-23
Identities = 92/108 (85%), Gaps = 2/108 (2%)
Strand=Plus/Plus
Query 285 CCACCACCACCTTATTACTCTCCTTCTCC-AAAGGTTGAGTACAAGTCTCCTCCACCACC 343
||||||||||| || || || || ||||| ||| ||||||||||||||||||||||||||
Sbjct 214 CCACCACCACCATACTATTCACCATCTCCTAAA-GTTGAGTACAAGTCTCCTCCACCACC 272
Query 344 ATATGTTTACAAATCTCCACCTCCACCATCGTATTCACCTTCTCCAAA 391
|||||| ||||| |||||||| ||||||| || || || || |||||
Sbjct 273 ATATGTCTACAACTCTCCACCACCACCATATTACTCTCCATCCCCAAA 320
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20107099600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5