BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938383
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54600.1 | Symbols: | Class I glutamine amidotransferase-li... 2001 0.0
> AT3G54600.1 | Symbols: | Class I glutamine amidotransferase-like
superfamily protein | chr3:20210859-20213080 FORWARD LENGTH=1593
Length=1593
Score = 2001 bits (1083), Expect = 0.0
Identities = 1178/1225 (96%), Gaps = 2/1225 (0%)
Strand=Plus/Plus
Query 21 ATGGGATCAATGGCTAATAAATCAGTTTTGATGTTATGCGGAGAGTTCATGGAAGCCTAT 80
||||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||
Sbjct 190 ATGGGATCAATGGCTCAGAAATCGGTTTTGATGTTATGCGGAGAGTTCATGGAAGCCTAC 249
Query 81 GAGACTATAGTACCTCTCTACGTCCTCCAAGCGTTTGGCGTTAGCGTCCACTGCGTTTCT 140
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 250 GAGACTATAGTACCTCTCTACGTCCTCCAAGCGTTTGGTGTTAGCGTCCACTGCGTTTCT 309
Query 141 CCTGGTCGCAAAACTGGCGACAAGTGCGTCATGGCTGCTCATGATCTCCTTGGCCTCGAG 200
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 310 CCTGGTCGCAAAACTGGCGACAAGTGCGTCATGGCCGCTCACGATCTCCTTGGCCTCGAG 369
Query 201 ATATACACCGAATTGGTGGTTGACCATCTAACACTAAACGCAAACTTCGATGACGTCATC 260
|||||||||||| |||||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 370 ATATACACCGAACTGGTGGTTGACCATCTAACACTAAACGCTAACTTCGATGGCGTCATC 429
Query 261 CCCGACCAATACGACGCAATCATCATTCCCGGTGGACGTTTCACGGAACTTTTGAGCGCC 320
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 CCCGACCAATACGACGCCATCATCATTCCCGGTGGACGTTTCACGGAACTTTTGAGCGCC 489
Query 321 GACGAGAAATGCCTGAGTCTTGTGGCTAGATTCGCCGAACTCAAGAAGCTCATCTTCACG 380
|||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 490 GACGAGAAATGCGTGAGTCTTGTTGCTAGATTCGCCGAACTCAAGAAGCTCATCTTCACG 549
Query 381 AGCTGCCACAGTCAGCTGTTTCTCGCGGCGGCGGGTCTGCTCACCGGTGGAATGAAGTGC 440
||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 550 AGCTGCCACAGCCAGCTGTTTCTTGCGGCGGCAGGTCTGCTCACCGGTGGAATGAAGTGC 609
Query 441 ACGGCGTTCGAAAGCATGAAACCGTTGATAGAGCTCTCCGGCGGCGCGTGGTGGCAACAG 500
|||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||
Sbjct 610 ACGGCGTTCGAAAGCATGAAACCGTTTATCGAGCTCTCCGGCGGCGCATGGTGGCAACAG 669
Query 501 CCTGGAGTCCAGTCCCTTTTCGACATAACTGATTGTGTCAAGGACGGCTGTTTCATGTCC 560
|||||||||||| |||||||||| || ||||||||||||||||||||| |||||||||||
Sbjct 670 CCTGGAGTCCAGACCCTTTTCGAAATCACTGATTGTGTCAAGGACGGCAGTTTCATGTCC 729
Query 561 ACTATGGGGTGGCCAACGCTTGGCCACAGTCTCAAAGTTTTGTTTGAATCACTTGGCTCC 620
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 730 ACTATGGGGTGGCCAACGCTTGGCCATAGTCTCAAAGTTTTGTTAGAATCACTTGGCTCC 789
Query 621 AAGATTTGTAGCTCTAAAGAGAATCACCAGCCTTCTTTGCTTTTCTTGATCGGGGATTGT 680
||||||| |||||||||||||||||| ||| ||||||||||||||||||| |||||||||
Sbjct 790 AAGATTTCTAGCTCTAAAGAGAATCATCAGACTTCTTTGCTTTTCTTGATTGGGGATTGT 849
Query 681 GTTGAAGATTATAGTATCAATGTACCATTTAAAGCGTTTCAAGCTTTGGGATGTAAAGTG 740
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 850 GTTGAAGATTATAGTATCAACGTACCATTTAAAGCGTTTCAAGCTTTGGGATGTAAAGTG 909
Query 741 GACGCAGTGACGCCAACCAAGAAGAGAGGTGAGAAATGTGCTACAATCGTTCACGACCTT 800
|| ||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||
Sbjct 910 GATGCAGTGACGCCAACCAAGAAGAGAGGTGAGAAATGCGCTACAATCGTACACGACCTT 969
Query 801 GAAGATGGACGGCAACTTCCTACTGAGAAGTTTGGTCACAACTTCTATGTGACCGTTGCG 860
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 970 GAAGACGGACGGCAACTTCCTACTGAGAAGTTTGGTCACAACTTCTATGTGACCGTTGCG 1029
Query 861 TGGGATGATGTCTCTGTCGATGATTACGACTGCATTGTGGTTCCCGGAGGAAGATCTCCA 920
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 TGGGATGATGTCTCTGTGGATGATTACGACTGCATTGTGGTTCCCGGAGGAAGATCTCCG 1089
Query 921 GAGCTCTTGGTGATGAACCCCAAGGCTGTCGAATTGGTCAGAACGTTTGTTGAGAAAGGC 980
|||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct 1090 GAGCTCTTGGTGATGAACCCCAAGGCCGTCGAATTGGTCAGAAAGTTTGTTGAGAAAGGC 1149
Query 981 AAGTTTGTTGCTGCCATTGGAATGGGAAATTGGCTACTTGCCGCGACAGGCGCTCTTAAG 1040
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1150 AAGTTTGTTGCTGCCATTGGAATGGGAAATTGGCTACTTGCCGCCACAGGCGCCCTTAAG 1209
Query 1041 AAGAAGAGATGTGCAAGTAGTTATGGGACAAAGGTGGCTATGAAAGTTGCTGGTGGTGAG 1100
||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||
Sbjct 1210 AAGAAGAGATGTGCAAGTAGTTATGGGACAAAGGTGGCTGTGAAGGTTGCTGGTGGTGAG 1269
Query 1101 ATCGTGGAATCAGAACGGTGTGTGACCGACGACAAGCTGATCACAGCCGCATCAACTTCC 1160
||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct 1270 ATCGTGGAATCTGAACGGTGCGTGACCGACGACAAGCTGGTCACAGCCGCATCAACTTCC 1329
Query 1161 GATCTTCCTGCCTTTTTGTATGCATTGTCGACTGCACTTGGTCTCTCTGTTGTATTCTAA 1220
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1330 GATCTTCCTGCCTTTTTGTATGCATTGTCGACTGCACTTGGTCTCTCTGTTGTATTCTAA 1389
Query 1221 TGTCAAGTGGTGCTTTA-CTGTCTA 1244
||||||||||||||||| | |||||
Sbjct 1390 TGTCAAGTGGTGCTTTAAC-GTCTA 1413
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5