BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938412
Length=1945
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54850.1 | Symbols: ATPUB14, PUB14 | plant U-box 14 | chr3:2... 3044 0.0
> AT3G54850.1 | Symbols: ATPUB14, PUB14 | plant U-box 14 | chr3:20321422-20324020
FORWARD LENGTH=2173
Length=2173
Score = 3044 bits (1648), Expect = 0.0
Identities = 1850/1949 (95%), Gaps = 8/1949 (0%)
Strand=Plus/Plus
Query 3 TGG-ACAGCAAAATTC-AAGGGATGGGATTAACGAA---TTGTTCCCACGAGGAGTTAAT 57
||| |||| |||| || |||||||||||||||||| |||||||||||||||| ||||
Sbjct 82 TGGAACAGTAAAA-TCTGAGGGATGGGATTAACGAATTGTTGTTCCCACGAGGAGCTAAT 140
Query 58 GAGTCGACTCGTTGACTCGGTGAAAGAAATATCTGGGTTTTCATCTTCAAGGGGTTTTAT 117
|||||||||||||||||| || ||||||||||| ||||||||||||||||||||||||||
Sbjct 141 GAGTCGACTCGTTGACTCCGTTAAAGAAATATCAGGGTTTTCATCTTCAAGGGGTTTTAT 200
Query 118 TGGGAAGATCCAAGGCGATCTTGTTCGTAGGATCACGCTTCTCAGCCCTTTCTTCGAGGA 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 201 TGGGAAGATCCAAGGCGATCTTGTTCGTAGGATCACGCTTCTCAGCCCTTTCTTCGAGGA 260
Query 178 ATTGATAGACGTTAATGTTGAATTGAAGGAGGATCAAATTGCAGGGTTTGAGGTTATGAG 237
|||||| ||||| |||||||||||||| ||||||| ||| |||||||||||| ||||||
Sbjct 261 ATTGATTGACGTCAATGTTGAATTGAAAAAGGATCAGATTACAGGGTTTGAGGCTATGAG 320
Query 238 AATCGCTCTTGATTCAAGTCTTGAGCTTTTTCGATCCGTTCATGGAGGCAGCAAGCTTTT 297
|||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 321 AATCGCTCTTGATTCAAGTCTTGAGCTTTTTCGATCGGTTAATGGAGGAAGCAAGCTTTT 380
Query 298 TCAGATTTTCGATAGAGATTCTCTTGTGCTGAAGTTCCACAACATGACGGTGGAGATAGA 357
|||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 381 TCAGCTTTTCGATAGAGATTCTCTTGTGGAGAAGTTCCGTGACATGACAGTGGAGATAGA 440
Query 358 AGCAGCGTTAAGTCAAATTCCTTATGATAAGATTGAGGTATCAGAGGAAGTCAGAGAACA 417
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 441 AGCAGCGTTAAGTCAGATTCCTTATGAGAAGATTGAGGTATCAGAGGAAGTCAGAGAACA 500
Query 418 GGTTCAGCTTCTGCATTTTCAGTTCAAGAGAGCAAAAGAAAGACGGGAAGAGTATGATAT 477
||||||||||||||||||||||||||||||||||||||||||| |||| |||| |||| |
Sbjct 501 GGTTCAGCTTCTGCATTTTCAGTTCAAGAGAGCAAAAGAAAGATGGGAGGAGTCTGATCT 560
Query 478 ACAGCTTAGCCATGATCTAGCCATGGCAGAGGATGTAATGGATCCTGACCCTAATA-TCC 536
||||||||||||||||||||| ||||||||| |||| |||||||||||||||| || |||
Sbjct 561 ACAGCTTAGCCATGATCTAGCTATGGCAGAGAATGTGATGGATCCTGACCCTA-TAATCC 619
Query 537 TCAAAAAACTTTCACAAGAGCTCCAACTTAGTACCATTGATGAACTGAAGAAAGAATCAC 596
|||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||| |
Sbjct 620 TCAAAAGACTTTCACAAGAGCTCCAACTTACTACCATTGATGAGCTGAAGAAAGAATCGC 679
Query 597 ATGCAATACATGAATATTTTCTTTCATATGATGGGGATCCTGATGACTGTTTCGAGAGGA 656
|||| |||||||| |||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 680 ATGCGATACATGAGTATTTTCTTTCATATGATGGAGATCCTGATGACTGTTTCGAGAGGA 739
Query 657 TGTCCTCACTTCTTAAAAAGCTGGTAGACTTTGTAACAATGGAAAGTTCAGACCCCGATC 716
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||| ||||
Sbjct 740 TGTCTTCACTTCTTAAAAACCTGGTAGACTTTGTAACAATGGAAAGTTCAGACCCTGATC 799
Query 717 CATCCACTGGCAACAGAATCATTTCGAGACATCGTTCTCCTGTTATACCAGAGTATTTTC 776
|||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 800 CATCCACTGGCAGCAGAATCGTTTCGAGACATCGTTCTCCTGTTATACCAGAGTATTTTC 859
Query 777 GGTGTCCGATATCACTTGAACTGATGAAAGATCCTGTTATCGTTTCCACTGGACAGACAT 836
|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||
Sbjct 860 GGTGTCCGATATCACTTGAACTGATGAAGGATCCTGTTATCGTCTCCACTGGACAGACAT 919
Query 837 ATGAAAGATCATCAATTCAGAAGTGGCTTGATGCTGGTCATAAAACCTGTCCGAAATCTC 896
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 920 ATGAAAGATCATCAATTCAGAAGTGGCTTGATGCTGGTCATAAAACATGTCCGAAATCTC 979
Query 897 AGGAGACACTTTTACATGCTGGATTAACCCCTAATTACGTGTTAAAGAGTCTCATTGCTC 956
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 980 AGGAGACACTTTTACATGCTGGATTAACCCCTAATTATGTGTTAAAGAGTCTCATTGCTT 1039
Query 957 TGTGGTGTGAAAGCAACGGCATTGAGCTACCGCAAAATCAAGGGAGCTGCAGAACCACAA 1016
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1040 TGTGGTGTGAAAGCAACGGCATTGAGCTACCGCAAAATCAAGGGAGCTGTAGAACCACAA 1099
Query 1017 AAACAGGAGGAAGCAGCTCTTCAGATTGTGATCGAACATTTGTCGTTTCCTTGTTAGAGA 1076
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1100 AAATAGGAGGAAGCAGCTCTTCAGATTGTGATCGAACATTTGTCCTTTCCTTGTTAGAGA 1159
Query 1077 AATTGGCCAATGGTACTACCGAACAGCAAAGAGCTGCAGCTGGAGAATTACGGTTACTAG 1136
|||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1160 AATTGGCCAACGGTACTACAGAACAGCAAAGAGCTGCAGCTGGAGAATTAAGGTTACTAG 1219
Query 1137 CCAAGAGGAACGTGGATAACAGAGTTTGTATCGCTGAGGCTGGAGCCATACCACTGCTTG 1196
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1220 CCAAGAGGAACGTGGATAACAGAGTTTGTATCGCTGAGGCTGGAGCCATACCACTCCTTG 1279
Query 1197 TAGAGCTTCTGTCCTCACCAGATCCTCGGACTCAAGAACATTCTGTGACGGCTCTTCTCA 1256
|||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| |
Sbjct 1280 TAGAGCTTCTATCCTCACCAGATCCTCGGACTCAGGAACATTCTGTGACAGCTCTTCTGA 1339
Query 1257 ATCTTTCCATAAATGAAGGGAACAAAGGAGCCATTGTTGATGCAGGAGCCATAACAGATA 1316
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1340 ATCTTTCCATAAATGAAGGGAACAAAGGAGCCATTGTTGATGCAGGAGCCATAACGGATA 1399
Query 1317 TTGTAGAAGTACTAAAAAACGGAAGCATGGAGGCTAGAGAGAACGCAGCTGCGACCCTTT 1376
| |||||||| ||||| |||||||||||||| |||||||||||||| ||||| |||||||
Sbjct 1400 TAGTAGAAGTCCTAAAGAACGGAAGCATGGAAGCTAGAGAGAACGCTGCTGCAACCCTTT 1459
Query 1377 TCAGTTTATCTGTTATAGATGAAAACAAAGTGGCGATAGGTGCTGCTGGAGCTATCCAAG 1436
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1460 TCAGTTTATCTGTTATAGATGAAAACAAAGTGGCAATAGGTGCTGCTGGAGCTATCCAAG 1519
Query 1437 CACTTATAAGCTTGCTTGAGGAAGGAACCCGAAGAGGCAAAAAAGACGCTGCAACAGCGA 1496
|||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||
Sbjct 1520 CACTTATAAGCTTGCTTGAGGAAGGAACCCGAAGAGGCAAAAAAGATGCTGCTACAGCGA 1579
Query 1497 TTTTCAATTTATGCATATACCAGGGGAACAAATCAAGGGCGGTTAAAGGCGGTATTGTTG 1556
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1580 TTTTCAACTTATGCATATACCAGGGGAACAAATCAAGGGCGGTTAAAGGCGGTATTGTTG 1639
Query 1557 ACCCTCTGACAAGATTACTAAAAGATGCAGGTGGCGGAATGGTGGATGAGGCTTTGGCGA 1616
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| |
Sbjct 1640 ACCCTCTGACCAGATTACTGAAAGATGCAGGTGGCGGAATGGTGGATGAGGCTCTGGCCA 1699
Query 1617 TTCTGGCAATTCTTTCGACAAACCAAGAAGGGAAAGCAGCGATAGCTGAAGCAGAATCGA 1676
|| | ||||||||||| || ||||||||||||||| |||||||||||||||||||||| |
Sbjct 1700 TTTTAGCAATTCTTTCAACTAACCAAGAAGGGAAAACAGCGATAGCTGAAGCAGAATCTA 1759
Query 1677 TCCCAGTTTTGGTTGAGATTATAAGGACAGGGTCACCAAGGAACCGAGAAAATGCTGCAG 1736
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1760 TCCCGGTTTTGGTTGAGATTATAAGGACAGGGTCACCAAGGAACCGGGAAAATGCTGCAG 1819
Query 1737 CAATACTTTGGTATCTATGTATTGGGAATATGGAAAGGCTAAATGTTGCAAGAGAGGTTG 1796
||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1820 CAATACTTTGGTATCTATGTATTGGGAATATAGAAAGGCTAAATGTAGCAAGAGAGGTTG 1879
Query 1797 GTGCAGATGTGGCCTTGAAGGAACTTACTGAGAATGGAACTGATAGAGCAAAGAGGAAAG 1856
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1880 GTGCAGATGTGGCCTTGAAGGAACTTACTGAGAATGGCACTGATAGAGCAAAGAGGAAAG 1939
Query 1857 CTGCGAGCTTGTTGGAGCTCATTCAGCAAACCGAAGTTGTTGCAGTATCTACTGTTCCAT 1916
||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||
Sbjct 1940 CTGCGAGCTTGTTGGAGCTTATTCAGCAAACCGAAGGTGTTGCAGTAACTACTGTTCCAT 1999
Query 1917 GAAAGCCTCGGTCTTGTGGAATGTTATTT 1945
|||||||||| |||| |||||||||||||
Sbjct 2000 GAAAGCCTCGCTCTTTTGGAATGTTATTT 2028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 96334845855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5