BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938418
Length=556
Score E
Sequences producing significant alignments: (Bits) Value
AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein... 815 0.0
> AT3G54900.1 | Symbols: CXIP1, ATGRXCP | CAX interacting protein
1 | chr3:20341588-20342393 REVERSE LENGTH=806
Length=806
Score = 815 bits (441), Expect = 0.0
Identities = 511/544 (94%), Gaps = 7/544 (1%)
Strand=Plus/Plus
Query 18 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTCCGGTCACCGTCGTCTCC 77
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 20 AAAATGGCTCTCCGATCTGTCAAAACGCCGACCTTGATAACTTCGGTCGCCGTCGTCTCC 79
Query 78 TCCTCCGTAATCAACAAGCCACACTCTATAAGATTCTCTCTTAAACCAACGGCGGCACTC 137
|||||||| | ||||||||| |||||||| ||||||||||||||||||||| ||||||||
Sbjct 80 TCCTCCGTTACCAACAAGCCTCACTCTATCAGATTCTCTCTTAAACCAACGTCGGCACTC 139
Query 138 GCCGTTCACAACCGTCAGCCATCGTTCTAC-G---G--TCTCAAGCTCAAACCAACAAAA 191
| ||| || |||| ||||| |||||||||| | | ||||||||| |||||||| |||
Sbjct 140 GTCGTCCATAACCATCAGCTATCGTTCTACGGTTCGAATCTCAAGCTGAAACCAACTAAA 199
Query 192 TTCCGATGCTCTGCGTCGGCGCTTACGCCGCAACTTAAAGATACGCTGGAGAAACTGGTG 251
||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 200 TTCCGATGCTCAGCGTCGGCTCTTACGCCGCAACTTAAAGACACGCTGGAGAAACTGGTG 259
Query 252 AATTCGGAGAAAGTGGTTCTGTTCATGAAAGGAACGAGAGATTTCCCGATGTGTGGATTC 311
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 260 AATTCGGAGAAAGTGGTTCTGTTTATGAAAGGAACGAGAGACTTCCCGATGTGTGGATTC 319
Query 312 TCCAACACTGTGGTTCAGATCTTGAAGAATTTGAATGTTCCTTTTGAAGATGTGAATATT 371
|||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||||
Sbjct 320 TCCAACACTGTGGTTCAGATTTTGAAGAATCTGAATGTTCCTTTCGAAGATGTGAATATT 379
Query 372 CTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCT 431
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 CTGGAGAATGAGATGTTGAGGCAAGGACTTAAAGAGTATTCGAATTGGCCGACGTTTCCT 439
Query 432 CAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAG 491
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 CAGCTTTATATCGGCGGTGAGTTTTTCGGTGGTTGTGATATTACTCTTGAGGCGTTTAAG 499
Query 492 AGTGGGGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGATTCTGGTT-CAATAC 550
| ||| |||||||||||||||||||||||||||||||||||||||| ||| || ||||||
Sbjct 500 ACTGGAGAATTGCAGGAAGAGGTGGAGAAAGCTATGTGCTCTTGATCCTGATTTCAATAC 559
Query 551 TTGG 554
||||
Sbjct 560 TTGG 563
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26674332057
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5