BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938428
Length=824
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55000.1 | Symbols: TON1A, TON1 | tonneau family protein | c... 1306 0.0
AT3G55005.1 | Symbols: TON1B | tonneau 1b (TON1b) | chr3:203839... 961 0.0
AT2G16140.1 | Symbols: | transposable element gene | chr2:7005... 148 6e-35
> AT3G55000.1 | Symbols: TON1A, TON1 | tonneau family protein |
chr3:20381508-20383789 FORWARD LENGTH=1099
Length=1099
Score = 1306 bits (707), Expect = 0.0
Identities = 770/801 (96%), Gaps = 1/801 (0%)
Strand=Plus/Plus
Query 22 ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCCTAGAG 81
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 105 ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCCTAGAG 164
Query 82 AAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAGGCAATT 141
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 165 AAGAAAGGTGTCCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAAGCAATT 224
Query 142 GAAGAAGAGGATAGAGTGATAGATAACAACGAAGGACTTCCTCCAGCTTTGTTGGGAAGC 201
||||||||||||||||||||||| ||||| ||||||| ||||||||| |||||||||||
Sbjct 225 GAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACCGCCTCCAGCTCTGTTGGGAAGC 284
Query 202 TGCAATGAGCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGCAGGTTACTATCTGCGTTG 261
|| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 285 TGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGAAGGTTACTATCTGCGTTG 344
Query 262 ATTTGTGAATATTTGGACTGGGCGCAACTAAATCACACGCTCAAAGTTTATCAACCTGAA 321
||||||||||| ||||||||||| ||||| ||||||||||||| ||||||||||||||||
Sbjct 345 ATTTGTGAATACTTGGACTGGGCACAACTTAATCACACGCTCATAGTTTATCAACCTGAA 404
Query 322 AGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACAATGGT 381
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 AGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACAATGGT 464
Query 382 TTTGAGCTCAACAGAAATGGAGATAGTGGACCGCTCCTTCTCGATGTTCTTGAAGGATTC 441
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 465 TTTGAGCTCAATAGAAATGGAGATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTC 524
Query 442 TTGAAGTTTGAGAGCATGACGCAGGGCATGGGTGGTAGTTCAAGGAGAGATTCAGAAACA 501
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 525 TTGAAGTTTGAGAGCATGACGCAGGGCATGGGTAGTAGTTCAAGGAGAGATTCAGAAACA 584
Query 502 GAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAGC 561
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 GAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAGC 644
Query 562 TTACCTCCTCAACGGAGGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCCGGGTTG 621
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 TTACCTCCTCAACGAAGGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCCGGGTTG 704
Query 622 TCTACATCTGGGTACAGAAAAGATGACTTCAATTGGAGACAAGGTAATCAAGATGCAAAT 681
|||||||||||||||||||||||||| ||||| |||||||||||||| |||||| || ||
Sbjct 705 TCTACATCTGGGTACAGAAAAGATGAATTCAACTGGAGACAAGGTAACCAAGATACACAT 764
Query 682 GAAGAGGTAACGAGAGCTTCGGCTGCGCTGGAAAATCTTCAGCTTGATAGGAAAACTCGG 741
||||||||||| |||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 765 GAAGAGGTAACAAGAGCTTCAGCGGCGCTGGAAAATCTACAGCTTGATAGGAAAACTCGG 824
Query 742 AACTTGACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAGGGAGGGAT 801
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 825 AACTTAACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAGGGAGAGAT 884
Query 802 TGATTTAGGCTTTGGGATAAA 822
||||||||||||||| |||||
Sbjct 885 TGATTTAGGCTTTGG-ATAAA 904
> AT3G55005.1 | Symbols: TON1B | tonneau 1b (TON1b) | chr3:20383956-20386382
FORWARD LENGTH=1138
Length=1138
Score = 961 bits (520), Expect = 0.0
Identities = 713/804 (89%), Gaps = 22/804 (3%)
Strand=Plus/Plus
Query 17 GAACAATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCC 76
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 171 GAACAATGGACGATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTCACTCGAACCC 230
Query 77 TAGAGAAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAGG 136
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 231 TAGAGAAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAACTCCGTGCAAGTGTGTTTGAGG 290
Query 137 CAATTGAAGAAGAGGATAGAGTGATAGATAACAACGAAGGACTTCCTCCAGCTTTGTTGG 196
|||| ||||||||||||||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 291 CAATCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCCAGCTTTGTTGG 350
Query 197 GAAGCTGCAATGAGCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGCAGGTTACTATCTG 256
||||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||
Sbjct 351 GAAGCTGCAATGATCGTGCAAGGCAGCTTCATGCTTCTCCTTCAGGCAGGTTGCTATCTG 410
Query 257 CGTTGATTTGTGAATATTTGGACTGGGCGCAACTAAATCACACGCTCAAAGTTTATCAAC 316
| |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||
Sbjct 411 CATTGATTTGTGAATATTTGGACTGGGCGCAATTAAATCACACGCTTAAAGTTTATCAAC 470
Query 317 CTGAAAGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACA 376
| ||| |||||| | |||||||||| |||||||||||| |||| ||||||| || |||||
Sbjct 471 CAGAATGCAATTCGGCAAAAGATTCTTGGAAGTCTGAGATACGTGACTTTAGTATCAACA 530
Query 377 ATGGTTTTGAGCTCAACAGAAATGGAGATAGTGGACCGCTCCTTCTCGATGTTCTTGAAG 436
|||||| ||||||||||||||||| ||||||| ||||||| ||||| |||||||||||||
Sbjct 531 ATGGTTATGAGCTCAACAGAAATGAAGATAGTAGACCGCTTCTTCTGGATGTTCTTGAAG 590
Query 437 GATTCTTGAAGTTTGAGAGCATGACGCAGGGCATGGGTGGTAGTTCAAGGAGAGATTCAG 496
||||||||||||| |||| ||||||||||| |||||||||||||||||||||||| ||||
Sbjct 591 GATTCTTGAAGTTCGAGAACATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAG 650
Query 497 AAACAGAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTG 556
|||| |||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 651 AAACCGAGTCGTCATTAAGCCTTGACACCAGAAATCCTCCTCGCAGATCATCTGCTTCTG 710
Query 557 ATAGCTTACCTCCTCAACGGA-GGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCC 615
|||||||||||| |||||| | || |||||||||||||||||||||||| || | ||
Sbjct 711 ATAGCTTACCTCATCAACG-ACGGTCGGTTTCTGCATCTCAAGCATCGG---GA-G--CC 763
Query 616 GGGTTGTCTACATCTGGGTACAGAAAAGATGACTTCAATTGGAGACAAGGTAATCAAGAT 675
| |||| || |||||||||||||| || |||||||||| | | | | |||||
Sbjct 764 G------CTACCTCAGGGTACAGAAAAGACGAGAGCAATTGGAGATATGACACTGAAGAT 817
Query 676 --GCAAATGAAGAGGTAACGAGAGCTTCGGCTGCGCTGGAAAATCTTCAGCTTGATAGGA 733
|| ||||| || | |||||| || | || || |||||||||||||| || ||||
Sbjct 818 ATGCCG--GAAGAAGTCATGAGAGCCTCAACAGCACTTGAAAATCTTCAGCTAGACAGGA 875
Query 734 AAACTCGGAACTTGACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAG 793
||||||||||| | |||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 876 AAACTCGGAACCTAACATCGTCTTGGAGGAATGTGAAGGATGGAACAAGTGAAGAAGAAG 935
Query 794 GGAGGGATTGATT--TA-GGCTTT 814
||||| |||| || ||||||
Sbjct 936 A-AGGGAAAGATTGATAAGGCTTT 958
> AT2G16140.1 | Symbols: | transposable element gene | chr2:7005823-7008272
FORWARD LENGTH=2450
Length=2450
Score = 148 bits (80), Expect = 6e-35
Identities = 101/111 (91%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 127 GTGTTTGAGGCAATT-GAAGAAGAGGATAGAGTGATAGATAACAACGAAGGACTTCCTCC 185
||||||||||| ||| ||||||||||||||||||||||| ||||| |||||||| |||||
Sbjct 1 GTGTTTGAGGC-ATTCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCC 59
Query 186 AGCTTTGTTGGGAAGCTGCAATGAGCGTGCAAGGAAGCTTCATGCTTCTCC 236
|||||||||||||||||||||||| | ||||||| ||| |||||| |||||
Sbjct 60 AGCTTTGTTGGGAAGCTGCAATGATCTTGCAAGGCAGCCTCATGCGTCTCC 110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40137083453
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5