BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938429
Length=811
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55005.1 | Symbols: TON1B | tonneau 1b (TON1b) | chr3:203839... 1286 0.0
AT3G55000.1 | Symbols: TON1A, TON1 | tonneau family protein | c... 950 0.0
AT2G16140.1 | Symbols: | transposable element gene | chr2:7005... 154 1e-36
AT3G52003.1 | Symbols: | pseudogene of TON1 microtubule organi... 134 2e-30
> AT3G55005.1 | Symbols: TON1B | tonneau 1b (TON1b) | chr3:20383956-20386382
FORWARD LENGTH=1138
Length=1138
Score = 1286 bits (696), Expect = 0.0
Identities = 772/809 (95%), Gaps = 3/809 (0%)
Strand=Plus/Plus
Query 6 TTGGCGGTGAGATCAATGGACGATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTC 65
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 161 TTGGCGGTAAGAACAATGGACGATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTC 220
Query 66 ACTCGAACCCTAGAGAAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAGCTCCGTGCGAGT 125
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 221 ACTCGAACCCTAGAGAAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAACTCCGTGCAAGT 280
Query 126 GTGTTTGAGGCAATTGAAGAAGAGGATAGAGTGATAGAGAACAACGAAGGACTTCCTCCA 185
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 281 GTGTTTGAGGCAATCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCCA 340
Query 186 GCTTTGTTGGGAAGCTGTAATGAGCGTGCAAGGCAGCTTCATGCTTCTCCTTCAGGCAGG 245
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 341 GCTTTGTTGGGAAGCTGCAATGATCGTGCAAGGCAGCTTCATGCTTCTCCTTCAGGCAGG 400
Query 246 TTGCTATCTGCATTGATTTGTGAATATTTGGACTGGGCGCAACTCAATCACACGCTCAAA 305
|||||||||||||||||||||||||||||||||||||||||| | ||||||||||| |||
Sbjct 401 TTGCTATCTGCATTGATTTGTGAATATTTGGACTGGGCGCAATTAAATCACACGCTTAAA 460
Query 306 GTTTATCAACCAGAATGCAATTTGGCAAAAGATTCTTGGAAGTCTGAGGTACGTGACTTT 365
|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct 461 GTTTATCAACCAGAATGCAATTCGGCAAAAGATTCTTGGAAGTCTGAGATACGTGACTTT 520
Query 366 AGTATCAACTATGGTTATGAGCTCAACAGAAATGGAGATAATAGACCGCTTCTTCTAGAT 425
||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||| |||
Sbjct 521 AGTATCAACAATGGTTATGAGCTCAACAGAAATGAAGATAGTAGACCGCTTCTTCTGGAT 580
Query 426 GTTCTTGAAGGATTCTTGAAGTTTGAGGACATGACGCAGGTCATGGGTGGTAGTTCAAGG 485
||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||
Sbjct 581 GTTCTTGAAGGATTCTTGAAGTTCGAGAACATGACGCAGGTCATGGGTGGTAGTTCAAGG 640
Query 486 AGAGAGTCAGAAACGGAGTCGTCATCAAGCCTTGACACCAGAAATCCTCCTCGCAGATCA 545
|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 641 AGAGAGTCAGAAACCGAGTCGTCATTAAGCCTTGACACCAGAAATCCTCCTCGCAGATCA 700
Query 546 TCTGCTTCTGATAGCTTACCTCCTCAACGACGGCCGGTTTCTGCATCTCAATCATCAGGA 605
|||||||||||||||||||||| |||||||||| ||||||||||||||||| |||| |||
Sbjct 701 TCTGCTTCTGATAGCTTACCTCATCAACGACGGTCGGTTTCTGCATCTCAAGCATCGGGA 760
Query 606 GCCGCTACCTCAGGGTACAGAAAAGACGAAAACAATTGGAGATATGACACTGAAGATATG 665
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct 761 GCCGCTACCTCAGGGTACAGAAAAGACGAGAGCAATTGGAGATATGACACTGAAGATATG 820
Query 666 CCGGAAGAAGTGATGAGAGCTTCAACAGCACTGGAAAATCTTCAGCTCGACAGGAAAACT 725
||||||||||| |||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 821 CCGGAAGAAGTCATGAGAGCCTCAACAGCACTTGAAAATCTTCAGCTAGACAGGAAAACT 880
Query 726 CGGAACCTAACATCGTCTTGGAGGAATGTGAAGGATGGAACAAGTGAAGAAGAAG--GG- 782
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 881 CGGAACCTAACATCGTCTTGGAGGAATGTGAAGGATGGAACAAGTGAAGAAGAAGAAGGG 940
Query 783 AAAGATTGATATGGATTTCGTTAAAATCC 811
||||||||||| || ||||||||||||||
Sbjct 941 AAAGATTGATAAGGCTTTCGTTAAAATCC 969
> AT3G55000.1 | Symbols: TON1A, TON1 | tonneau family protein |
chr3:20381508-20383789 FORWARD LENGTH=1099
Length=1099
Score = 950 bits (514), Expect = 0.0
Identities = 709/802 (88%), Gaps = 17/802 (2%)
Strand=Plus/Plus
Query 21 ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTCACTCGAACCCTAGAG 80
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 105 ATGGACGATTATACAAGAGAGATGATGGATCTCAAGACTTTGGTCACTCGAACCCTAGAG 164
Query 81 AAGAAAGGTGTTCTCGCTAAGATCCGGGCTGAGCTCCGTGCGAGTGTGTTTGAGGCAATT 140
||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 165 AAGAAAGGTGTCCTCGCTAAGATCCGGGCTGAGCTCCGTGCAAGTGTGTTTGAAGCAATT 224
Query 141 GAAGAAGAGGATAGAGTGATAGAGAACAACGAAGGACTTCCTCCAGCTTTGTTGGGAAGC 200
||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||
Sbjct 225 GAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACCGCCTCCAGCTCTGTTGGGAAGC 284
Query 201 TGTAATGAGCGTGCAAGGCAGCTTCATGCTTCTCCTTCAGGCAGGTTGCTATCTGCATTG 260
|||||||| ||||||||| |||||||||||||||||||||| ||||| |||||||| |||
Sbjct 285 TGTAATGATCGTGCAAGGAAGCTTCATGCTTCTCCTTCAGGAAGGTTACTATCTGCGTTG 344
Query 261 ATTTGTGAATATTTGGACTGGGCGCAACTCAATCACACGCTCAAAGTTTATCAACCAGAA 320
||||||||||| ||||||||||| ||||| ||||||||||||| |||||||||||| |||
Sbjct 345 ATTTGTGAATACTTGGACTGGGCACAACTTAATCACACGCTCATAGTTTATCAACCTGAA 404
Query 321 TGCAATTTGGCAAAAGATTCTTGGAAGTCTGAGGTACGTGACTTTAGTATCAACTATGGT 380
|||||||| |||||||||| |||||||||||| |||| ||||||| || |||| |||||
Sbjct 405 AGCAATTTGCCAAAAGATTCGTGGAAGTCTGAGTTACGCGACTTTAATAGCAACAATGGT 464
Query 381 TATGAGCTCAACAGAAATGGAGATAATAGACCGCTTCTTCTAGATGTTCTTGAAGGATTC 440
| ||||||||| ||||||||||||| | |||| || ||||| |||||||||||||| |||
Sbjct 465 TTTGAGCTCAATAGAAATGGAGATAGTGGACCACTCCTTCTCGATGTTCTTGAAGGGTTC 524
Query 441 TTGAAGTTTGAGGA-CATGACGCAGGTCATGGGTGGTAGTTCAAGGAGAGAGTCAGAAAC 499
||||||||||| || ||||||||||| ||||||| |||||||||||||||| ||||||||
Sbjct 525 TTGAAGTTTGA-GAGCATGACGCAGGGCATGGGTAGTAGTTCAAGGAGAGATTCAGAAAC 583
Query 500 GGAGTCGTCATCAAGCCTTGACACCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAG 559
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 584 AGAGTCGTCATCAAGCCTTGAGTCCAGAAATCCTCCTCGCAGATCATCTGCTTCTGATAG 643
Query 560 CTTACCTCCTCAACGACGGCCGGTTTCTGCATCTCAATCATC--A--G--GAGCCG---- 609
|||||||||||||||| |||||||||||||||||||| |||| | | ||||||
Sbjct 644 CTTACCTCCTCAACGAAGGCCGGTTTCTGCATCTCAAGCATCGGATAGAAGAGCCGGGTT 703
Query 610 --CTACCTCAGGGTACAGAAAAGACGAAAACAATTGGAGATATGACA-CTGAAGATATGC 666
|||| || |||||||||||||| ||| ||| |||||| | | | | |||||| |
Sbjct 704 GTCTACATCTGGGTACAGAAAAGATGAATTCAACTGGAGACAAGGTAACC-AAGATACAC 762
Query 667 CGGAAGAAGTGATGAGAGCTTCAACAGCACTGGAAAATCTTCAGCTCGACAGGAAAACTC 726
||||| || | ||||||||| | || ||||||||||| ||||| || ||||||||||
Sbjct 763 ATGAAGAGGTAACAAGAGCTTCAGCGGCGCTGGAAAATCTACAGCTTGATAGGAAAACTC 822
Query 727 GGAACCTAACATCGTCTTGGAGGAATGTGAAGGATGGAACAAGTGAAGAAGAAGGGAAAG 786
||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||| ||
Sbjct 823 GGAACTTAACATCGTCTTGGAGGAATGTGAGGGATGGAACAAATGAAGAAGAAGGGAGAG 882
Query 787 ATTGATAT-GGATTTCGTTAAA 807
|||||| | || ||| | ||||
Sbjct 883 ATTGATTTAGGCTTTGGATAAA 904
> AT2G16140.1 | Symbols: | transposable element gene | chr2:7005823-7008272
FORWARD LENGTH=2450
Length=2450
Score = 154 bits (83), Expect = 1e-36
Identities = 102/111 (92%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 126 GTGTTTGAGGCAATT-GAAGAAGAGGATAGAGTGATAGAGAACAACGAAGGACTTCCTCC 184
||||||||||| ||| ||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 1 GTGTTTGAGGC-ATTCGAAGAAGAGGATAGAGTGATAGAGAACAATGAAGGACTGCCTCC 59
Query 185 AGCTTTGTTGGGAAGCTGTAATGAGCGTGCAAGGCAGCTTCATGCTTCTCC 235
|||||||||||||||||| ||||| | ||||||||||| |||||| |||||
Sbjct 60 AGCTTTGTTGGGAAGCTGCAATGATCTTGCAAGGCAGCCTCATGCGTCTCC 110
> AT3G52003.1 | Symbols: | pseudogene of TON1 microtubule organization
protein | chr3:19295209-19295436 FORWARD LENGTH=117
Length=117
Score = 134 bits (72), Expect = 2e-30
Identities = 78/81 (96%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 27 GATTATACAAGAGAGATGATGGATCTCAAGACCTTAGTCACTCGAACCCTAGAGAAGAAA 86
|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 10 GATTATACTAGAGAGATGATGGATCTCAAGACCTTAGACACTCGAACCCTAGAGAAGAAA 69
Query 87 GGTGTTCTCGCTAAGATCCGG 107
| |||||||||||||||||||
Sbjct 70 GATGTTCTCGCTAAGATCCGG 90
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39484039542
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5