BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938432
Length=743
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55030.1 | Symbols: PGPS2 | phosphatidylglycerolphosphate sy... 1225 0.0
AT2G39290.1 | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerol... 593 6e-169
> AT3G55030.1 | Symbols: PGPS2 | phosphatidylglycerolphosphate
synthase 2 | chr3:20396760-20398653 FORWARD LENGTH=1231
Length=1231
Score = 1225 bits (663), Expect = 0.0
Identities = 718/744 (97%), Gaps = 5/744 (1%)
Strand=Plus/Plus
Query 1 GATCAGCTCTTGTGGAGGTTTTGGGTGAAGAAGACACCGTGACGGTGGATCAGAACAGTT 60
|||||||||||||||||| | |||||||||||||||||| ||||||||||||||||||||
Sbjct 81 GATCAGCTCTTGTGGAGGATATGGGTGAAGAAGACACCGCGACGGTGGATCAGAACAGTT 140
Query 61 TCGGTGGTGGCAAAGATT-ATTTGCTCCGTAATCGTCACTCGTCGCCATTGCCTTCACCG 119
|||||||||||||||||| | ||||| ||||||||||| |||||||||||||||||||||
Sbjct 141 TCGGTGGTGGCAAAGATTCA-TTGCTTCGTAATCGTCATTCGTCGCCATTGCCTTCACCG 199
Query 120 ACACAGCTATCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTAGGCCGTGTAGCT 179
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 200 ACACAGCTTTCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTTGGCCGTGTAGCT 259
Query 180 GCCGTTCCGATTCTCGTCGCGACCTTTTACGTTGATTGCTGGTGGGGAAAAACTGCTACA 239
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 260 GCCGTTCCGATTCTCGTCGCCACCTTTTACGTTGATTGCTGGTGGGGAAGAACTGCTACG 319
Query 240 ACAAGTATTTTTATTGCAGCAGCCATCACAGATTGGCTTGATGGATATATTGCACGGAAG 299
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 320 ACAAGTATTTTCATTGCAGCAGCCATTACAGATTGGCTTGATGGATATATTGCACGGAAG 379
Query 300 ATGAGATTAGGTTCTGCATTTGGTGCTTTTTTGGATCCAGTGGCGGATAAGCTTATGGTA 359
|||||||| ||||||| ||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 380 ATGAGATTGGGTTCTGAATTTGGTGCATTTTTGGATCCAGTGGCAGATAAGCTTATGGTA 439
Query 360 GCAGCTACATTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 440 GCAGCTACATTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTT 499
Query 420 CCATGGTTAGTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCA 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 500 CCATGGTTAGTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCA 559
Query 480 GTAAGAGAATGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGC 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 GTAAGAGAATGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGC 619
Query 540 TTGGGAAAGTGGAAAACCGCAACGCAGATGATAGCGTTAACCTTACTTCTTGCAAGCCGG 599
||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||
Sbjct 620 TTGGGAAAGTGGAAAACTGCAACGCAGATGATAGCGCTAACCATACTTCTTGCAAGCCGG 679
Query 600 GATAGCAGTTTTGAGAGACTATTACCGTCGGGTATTTGGTTGCTCTATGTATCCGCAGGG 659
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||
Sbjct 680 GATAGCAGTTTTGAGAGACTATTACCGTCGGGTATTGGGTTGCTCTATGTATCTGCAGGG 739
Query 660 CTCTCTATATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACTGCTAAAGAAG 719
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 CTCTCTATATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACTGCTAAAGAAG 799
Query 720 TAGCAACaaaaaaaaaCTCTTTTT 743
||||||||||||| ||||||||
Sbjct 800 TAGCAACAAAAAA---CTCTTTTT 820
> AT2G39290.1 | Symbols: PGPS1, PGP1, PGS1 | phosphatidylglycerolphosphate
synthase 1 | chr2:16407239-16409123 FORWARD LENGTH=1209
Length=1209
Score = 593 bits (321), Expect = 6e-169
Identities = 497/584 (85%), Gaps = 4/584 (1%)
Strand=Plus/Plus
Query 128 ATCTTCTAAAGTGATTACATTGCCTACCGTATTAACCCTAGGCCGTGTAGCTGCCGTTCC 187
|||||| ||||| |||||||||||||||||||||| || || ||||| || ||||| ||
Sbjct 335 ATCTTCCAAAGTTCTTACATTGCCTACCGTATTAACACTTGGTCGTGTCGCCGCCGTCCC 394
Query 188 GATTCTCGTCGCGACCTTTTACGTTGATTGCTGGTGGGGAAAAACTGCTACAACAAGTAT 247
| |||||||||| ||||||||||||||| | |||||||||| ||||||||||||||| ||
Sbjct 395 GCTTCTCGTCGCAACCTTTTACGTTGATAGTTGGTGGGGAACAACTGCTACAACAAGCAT 454
Query 248 TTTTATTGCAGCAGCCATCACAGATTGGCTTGATGGATATATTGCACGGAAGATGAGATT 307
||| |||||||||||||| ||||| |||||||| || ||| |||| || |||||||| ||
Sbjct 455 TTTCATTGCAGCAGCCATTACAGACTGGCTTGACGGCTATCTTGCCCGCAAGATGAGGTT 514
Query 308 AGGTTCTGCATTTGGTGCTTTTTTGGATCCAGTGGCGGATAAGCTTATGGTAGCAGCTAC 367
||||||||| |||||||| |||||||||||||| || |||||||||||||| ||||||||
Sbjct 515 AGGTTCTGCGTTTGGTGCCTTTTTGGATCCAGTTGCTGATAAGCTTATGGTTGCAGCTAC 574
Query 368 ATTGATATTGTTGTGCACTAAACCAATGGTCGCCGTTGTCTTAGGACCAGTTCCATGGTT 427
|||||| || |||| || ||||| || | | || ||||||||| ||||||||||
Sbjct 575 ATTGATTTTACTGTGTACAAAACCTATCCAAGTTGCTGAATTAGGACCACTTCCATGGTT 634
Query 428 AGTGACAGTACCTTCAATCGCCATCATTGGTAGAGAGATTACTATGTCTGCAGTAAGAGA 487
| |||| |||||||| || || ||||||||||| |||||||||||||| |||||||||||
Sbjct 635 ATTGACCGTACCTTCTATTGCAATCATTGGTAGGGAGATTACTATGTCCGCAGTAAGAGA 694
Query 488 ATGGGCTGCATCTCAAAACGGCAAGCTTTCAGAGGCTGTTGCTGTAAATAGCTTGGGAAA 547
|||||||||||||||||| || ||||||| |||||| ||||||||||||| |||||| ||
Sbjct 695 ATGGGCTGCATCTCAAAATGGAAAGCTTTTAGAGGCAGTTGCTGTAAATAACTTGGGCAA 754
Query 548 GTGGAAAACCGCAACGCAGATGATAGCGTTAACCTTACTTCTTGCAAGCCGGGATAGCAG 607
|||||||||||| |||||||||| ||| ||||| |||||||||||||||| |||||||
Sbjct 755 GTGGAAAACCGCCACGCAGATGACAGCACTAACCATACTTCTTGCAAGCCGAGATAGCAA 814
Query 608 TTTTGAGA-GACTATTACCGTCGGGTATTTGG-TTGCTCTATGTATCCGCAGGGCTCTCT 665
| ||| || | || || | || ||| | || ||||| |||||||| ||||| || |||
Sbjct 815 TGTTG-GATGGCTCGTAGCTTCAGGTGCT-GGCTTGCTTTATGTATCAGCAGGACTATCT 872
Query 666 ATATGGTCTTTAGTTGTTTATATGAGGAAGATATGGAGAGTACT 709
| |||||||||| |||||||||||||||||||||| ||||||
Sbjct 873 GTTTGGTCTTTAGCCGTTTATATGAGGAAGATATGGAAAGTACT 916
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36068117546
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5