BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938434
Length=1197
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55050.1 | Symbols: | Protein phosphatase 2C family protein... 1975 0.0
AT3G12620.1 | Symbols: | Protein phosphatase 2C family protein... 553 2e-156
> AT3G55050.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:20400488-20402585 REVERSE LENGTH=1650
Length=1650
Score = 1975 bits (1069), Expect = 0.0
Identities = 1158/1201 (96%), Gaps = 5/1201 (0%)
Strand=Plus/Plus
Query 1 TTTGGTTGAGACATGTGAATTATGGTATCTACAACATTTAGGAGAATTGTATCGCCTTGT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 294 TTTGGTTGAGACATGTGAATTATGGTATCTACAACATTTAGGAGAATTGTATCGCCTTGT 353
Query 61 TGGAGACCTTTTGGTATTGGAGAAGATTCGAGTCCTGGTAGTGATGATGCTAATGGCCGT 120
||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 354 TGGAGACCTTTTGGTATTGGAGAAGATTCTAGTCCTGGTAGTGATGATACGAATGGCCGT 413
Query 121 CTCGATGGTCTCTTGTGGTACAAAGATTCTGGGAACCACATCACTGGAGAGTTTTCTATG 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 414 CTCGATGGTCTCTTGTGGTACAAAGATTCTGGGAACCACATCACTGGAGAGTTTTCTATG 473
Query 181 GCAGTGGTTCAAGCTAACAACCTTCTTGAAGATCATAGCCAGTTAGAATCTGGTCCCATT 240
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 474 GCAGTCGTTCAAGCTAACAACCTTCTTGAAGATCATAGCCAGTTAGAATCTGGTCCTATT 533
Query 241 AGTTTGCATGATTCTGGACCTGAGGCAACTTTTGTTGGTGTTTATGATGGTCATGGAGGT 300
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 534 AGTTTGCATGAGTCTGGACCTGAGGCAACTTTTGTTGGTGTTTATGATGGTCATGGAGGT 593
Query 301 CCCGAGGCAGCTCGGTTTGTAAACGATAGACTCTTTTATAACATCAAGAGGTATACATCA 360
|||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 594 CCCGAGGCTGCTCGGTTTGTAAACGATAGGCTCTTTTATAACATCAAGAGGTACACATCA 653
Query 361 GAACAGCGAGGGATCTCACCCGATGTTATCACCAGAGGGTTTGTAGCAACAGAGGAGGAG 420
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 654 GAACAGCGAGGGATGTCGCCTGATGTTATCACCAGAGGGTTTGTAGCAACAGAGGAGGAG 713
Query 421 TTTCTCGGTTTAGTGCAGGAGCAATGGAAGAACAAGCCGCAGATTGCTTCTGTGGGAGCT 480
||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 714 TTTCTCGGTTTAGTGCAGGAGCAATGGAAGACCAAGCCACAGATTGCTTCTGTGGGAGCT 773
Query 481 TGTTGTTTGGTGGGTATTGTTTGTAATGGATTGTTGTATGTTGCAAACGCAGGAGATTCC 540
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 774 TGTTGTTTGGTTGGTATTGTTTGTAATGGATTGTTGTATGTTGCAAACGCAGGAGATTCT 833
Query 541 CGGGTTGTGTTAGGGAAAGTCGCGAATCCGTTTAAAGAGTTGAAGGCTGTTCAGCTATCG 600
||||||||||||||||||||||| |||||||||||||||||||| ||||||||| ||||
Sbjct 834 CGGGTTGTGTTAGGGAAAGTCGCAAATCCGTTTAAAGAGTTGAAAGCTGTTCAGTTATCA 893
Query 601 TCAGAGCATAATGCTAGTATTGAATCTGTGAGAGAGGAGTTACGTTTGTTGCACCCTGAT 660
||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 894 ACAGAGCATAATGCAAGTATCGAATCTGTGAGAGAGGAGTTACGTTTGTTGCATCCTGAT 953
Query 661 GATCCGAATATCGTGGTCTTGAAACACAAAGTTTGGCGTGTTAAAGGAATTATACAGGTT 720
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 954 GATCCGAATATCGTGGTCTTGAAACACAAAGTTTGGCGTGTTAAAGGGATTATACAGGTC 1013
Query 721 TCGAGATCCATTGGTGACGCATACCTTAAAAGAGCGGAGTTTAATCAAGAACCGCTATTG 780
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1014 TCAAGATCCATTGGTGACGCATACCTTAAAAGAGCGGAGTTTAATCAAGAACCGCTACTA 1073
Query 781 CCTAAGTTTAGAGTTCCAGAACGTTTTGAGAGGCCGATCATGAGAGCCGAACCGACTATA 840
||||||||||| ||||||||||||||||| | ||||||||||||||| ||||||||||||
Sbjct 1074 CCTAAGTTTAGGGTTCCAGAACGTTTTGAAAAGCCGATCATGAGAGCGGAACCGACTATA 1133
Query 841 ACAGTTCATAAGATTCACCCGGAAGATCAGTTTCTTATATTTGCCTCGGATGGTTTATGG 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1134 ACAGTTCATAAGATTCATCCGGAAGATCAGTTTCTTATATTTGCCTCGGATGGTTTATGG 1193
Query 901 GAGCATCTAAGCAACCAGGAAGCTGTTGATATTGTCAATTCTTGTCCACGCAATGGTGTG 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 GAGCATCTAAGCAACCAGGAAGCTGTTGATATTGTCAATTCTTGTCCACGCAATGGTGTG 1253
Query 961 GCTCGGAAGTTAGTGAAAGCTGCATTACAAGAAGCAGCAAAGAAGAGAGAGATGAGGTAT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GCTCGGAAGTTAGTGAAAGCTGCATTACAAGAAGCAGCAAAGAAGAGAGAGATGAGGTAT 1313
Query 1021 TCGGATTTGGAGAAGATAGAACGTGGCATCCGGCGACACTTTCACGACGATATAACCGTT 1080
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1314 TCTGATTTGGAGAAGATAGAACGTGGCATTCGGCGACACTTTCACGACGATATTACCGTT 1373
Query 1081 ATTGTTGTCTTCCTCCACGCTACAAACTTCGCCACTCGAACTCCGATCTCTGTCAAAGGA 1140
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1374 ATTGTTGTCTTCCTCCACGCTACAAACTTCGCTACTCGAACTCCGATCTCTGTCAAAGGA 1433
Query 1141 GGTGGTCTCCTCTCAGCCCATAATGCCC-TTTTATAGATCAttttttt-C-C-TTATTTG 1196
|||||||||||||||||||||||| ||| ||||||||||||||||||| | | |||||||
Sbjct 1434 GGTGGTCTCCTCTCAGCCCATAAT-CCCGTTTTATAGATCATTTTTTTTCTCCTTATTTG 1492
Query 1197 A 1197
|
Sbjct 1493 A 1493
> AT3G12620.1 | Symbols: | Protein phosphatase 2C family protein
| chr3:4009275-4011399 REVERSE LENGTH=1711
Length=1711
Score = 553 bits (299), Expect = 2e-156
Identities = 777/1004 (77%), Gaps = 48/1004 (5%)
Strand=Plus/Plus
Query 109 GCTAATGGCCG-TCTCGATGGTC-TCTTGTGGTACAAAGATTCTGGGAACCACATCACTG 166
|||||||| || | | ||||||| |||| ||||| ||||||||||| ||||| | |||
Sbjct 403 GCTAATGGTCGATGT-GATGGTCTTCTT-TGGTATAAAGATTCTGGTAACCATGTTGCTG 460
Query 167 GAGAGTTTTCTATGGCAGTGGTTCAAGCTAACAACCTTCTTGAAGATCATAGCCAG-TTA 225
||||||| |||||| | || |||||||||| || ||||| |||||||||||| || ||
Sbjct 461 GAGAGTTCTCTATGTCTGTTATTCAAGCTAATAATCTTCTCGAAGATCATAGCAAGCTT- 519
Query 226 GAATCTGGTCCCATTAGTTTGCATGATTCTGGACCTGAGGCAACTTTTGTTGGTGTTTAT 285
|| ||||| || ||||| || ||||||||| ||| | || ||||||||||||||||||
Sbjct 520 GAGTCTGGACCTGTTAGTATGTTTGATTCTGGTCCTCAAGCTACTTTTGTTGGTGTTTAT 579
Query 286 GATGGTCATGGAGGTCCCGAGGCAGCTCGGTTT-GTAAACGATAGAC-TCTTTTATAACA 343
||||||||||| ||||| || || || || ||| || || | | || |||| | ||||
Sbjct 580 GATGGTCATGGTGGTCCTGAAGCTGCCCG-TTTCGTTAATAA-ACACCTCTTCGACAACA 637
Query 344 TCAAGAGGTATACATCAGA-ACAGCGAGGGA-TCTCACCCGATGTTATCACCAGAGGGTT 401
||| || || ||||||||| | | | | ||| | || || ||||||| || | || |||
Sbjct 638 TCAGGAAGTTTACATCAGAGA-ATC-ATGGAATGTCTGCCAATGTTATAACTAAAGCGTT 695
Query 402 TGTAGCAACAGAGGAGGAGTTTCTCGGT-TTAGTGCAGGAG-CAATGGAAGAACAAGCCG 459
| |||| || || || || ||||| | || || | || | || ||| ||| || ||
Sbjct 696 TTTAGCTACGGAAGAAGATTTTCTTTCTCTT-GTCC-GGCGGCAGTGGCAGATTAAACCA 753
Query 460 CAGATTGCTTCTGTGGGAGCTTGTTGTTTGGT-GGGTATTGTTTGTAATGGATTGTTGTA 518
|||||||||||||| |||||||||||| |||| ||| || | |||| ||||||||||||
Sbjct 754 CAGATTGCTTCTGTTGGAGCTTGTTGTCTGGTAGGG-ATCATATGTAGTGGATTGTTGTA 812
Query 519 TGTTGCAAACGCAGGAGATTCCCGGGTTGTGTTAGGGAA-AGTCGCGAATCCGTTTAAAG 577
| |||||||||| |||||||| ||||||||| |||| || | | | || ||||||||
Sbjct 813 TATTGCAAACGCTGGAGATTCTCGGGTTGTGCTAGG-AAGACTGGAAAAAGCGTTTAAA- 870
Query 578 AGTTG--AAGGCTGTTCAGCTATCGTCAGAGCATAATGCTAGTATTGAATCTGTGAGAGA 635
| ||| ||||| |||||| ||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 871 A-TTGTCAAGGCCGTTCAGTTATCGTCTGAGCATAATGCAAGTCTTGAATCTGTGAGAGA 929
Query 636 GGAGTTACGTTTGTTGCACCCTGATGATCCGAATATCGTGGTCTTGAAACACAAAGTTTG 695
|||||| || | |||||| || ||||||| | || ||||||||||| |||||||||||
Sbjct 930 GGAGTTGCGCTCGTTGCATCCAAATGATCCTCAGATTGTGGTCTTGAAGCACAAAGTTTG 989
Query 696 GCGTGTTAAAGGAATTATACAGGTTTCGA-GATCCATTGGTGACGCATACCTTAAA-AGA 753
|||||| ||||| |||||||||||||| | | || |||||||| |||||| ||||| | |
Sbjct 990 GCGTGTCAAAGGTATTATACAGGTTTC-ACGGTCGATTGGTGATGCATAC-TTAAAGAAA 1047
Query 754 GCGGAGTTTAATCAAGAACCGCTATTGCCTAAGTTTAGAGTTCCAGAACGTTTTG-AGAG 812
|| || || || | ||||| | ||| | ||||| || || || || ||||| | |
Sbjct 1048 GCAGAATTCAACCGGGAACCATTGTTGGCAAAGTTCAGGGTCCCTGAG-GTTTTCCATAA 1106
Query 813 GCCGATCATGAGAGCCGAACCGACTATAACAGTTCATAAGATTCACCCGGAAGATCAGTT 872
||| ||| | ||||| || ||| | || ||||| || || || || || |||||||||||
Sbjct 1107 GCCCATCCTTAGAGCAGAGCCGGCAATTACAGTACACAAAATCCATCCAGAAGATCAGTT 1166
Query 873 TCTTATATTTGCCTCGGATGGTTTATGGGAGCATCTAAG-C-AACCAGGAAGCTGTTGAT 930
|||||||||||| || || || || |||||||| || | | || || |||||||||||
Sbjct 1167 TCTTATATTTGCATCAGACGGCTTGTGGGAGCA-CTT-GTCCAATCAAGAAGCTGTTGAC 1224
Query 931 ATTGTCAATTCTTGTCCACGCAATGGTG-TGGCTCGGAAGTT-AGTGAAAGCTGCAT-TA 987
||||| || | || || |||||||| | | || ||||| | | | ||| | || | ||
Sbjct 1225 ATTGTGAACACATGCCCGCGCAATGG-GATTGCAAGGAAGCTCA-TAAAAACAGC-TCTA 1281
Query 988 CA-AGAAGCAGCAAAGAAGAGAGAGATGAGGTATTCGGATTTGGAGAAGATAGA-ACGTG 1045
| ||| ||||||||||||||||||||||| ||||||||| | | ||||| || | | |
Sbjct 1282 -AGAGAGGCAGCAAAGAAGAGAGAGATGAGATATTCGGATCTAAAAAAGATCGATA-GAG 1339
Query 1046 GCA-TCCGGCGACACTTTCACGACGATATAACCGTTATTGTTGT 1088
| | | ||| |||| ||||| || |||||||| || || |||||
Sbjct 1340 G-AGTGCGGAGACATTTTCATGATGATATAACAGTCATAGTTGT 1382
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 58784838195
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5