BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938438
Length=2252
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55090.1 | Symbols: | ABC-2 type transporter family protein... 3465 0.0
> AT3G55090.1 | Symbols: | ABC-2 type transporter family protein
| chr3:20416342-20418552 REVERSE LENGTH=2211
Length=2211
Score = 3465 bits (1876), Expect = 0.0
Identities = 2100/2211 (95%), Gaps = 4/2211 (0%)
Strand=Plus/Plus
Query 21 ATGTCTCGCATACTAGTAGAAGATGATAATGCAACACCGTTTCATTCCATGGAGATTATT 80
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCTCGCATACTAGTAGAAGATGATAATGCAACACCGTTTCATTCCATGGAGATTATT 60
Query 81 AGCTCGTCGTTGACTTTAGGTCAACTTCTCAAGAACGTTAGCGACGTTCGAAAGGTACAA 140
||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||| ||
Sbjct 61 AGCTCATCTTTGACTTTAGGCCAACTTCTCAAGAACGTTAGCGACGTTCGTAAGGTTGAA 120
Query 141 GTCGGTGACGAGACTCCTGTTCATGAGTTCTTTGACCGAGACGGTTCATCACTTGACGGA 200
|| |||||||| |||||||||||||| ||||||||| | || ||||| ||||||||||||
Sbjct 121 GTTGGTGACGAAACTCCTGTTCATGAATTCTTTGACAGGGATGGTTCTTCACTTGACGGA 180
Query 201 GATGATGATCATCTCATGCGTCCTGTTCCCTTCGTTCTATCTTTCAACAATCTCACTTAC 260
||| |||||||||| |||||||||||||| |||||||||||||||||||| || ||||||
Sbjct 181 GATAATGATCATCTTATGCGTCCTGTTCCTTTCGTTCTATCTTTCAACAACCTTACTTAC 240
Query 261 AACGTCTCTGTTCGCCGGAAACTTGAGTTTCACGACCTGGTTCCATGGAGGAGGTCATCT 320
|||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 241 AACGTCTCTGTTCGCCGGAAACTTGACTTTCACGACCTGGTTCCATGGAGGAGGACATCT 300
Query 321 TTCTCCAAGACCAAGACACTTCTAGACAATATCTCCGGTGAGACACGTGACGGAGAGATT 380
||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 301 TTCTCCAAGACCAAGACTCTTCTAGACAATATCTCCGGTGAGACTCGTGACGGAGAGATT 360
Query 381 CTTGCCGTTCTTGGAGCTAGCGGGTCAGGTAAATCCACTCTCATTGACGCTTTAGCGAAT 440
||||||||||||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct 361 CTTGCCGTTCTTGGAGCTAGCGGGTCAGGTAAATCCACTTTGATCGACGCTTTAGCGAAT 420
Query 441 CGGATCGCTAAAGGAAGCTTGAAAGGCACGGTAACTCTTAACGGAGAAGCTCTTCAATCT 500
||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 421 CGGATCGCTAAAGGAAGCTTGAAGGGCACGGTAACGCTTAACGGAGAAGCTCTTCAATCT 480
Query 501 CGGATGCTCAAGGTTATATCAGCGTATGTAATGCAAGACGATCTTCTCTTCCCGATGCTT 560
|||||||| || ||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 481 CGGATGCTGAAAGTTATCTCAGCTTATGTAATGCAAGACGATCTTCTCTTCCCGATGCTT 540
Query 561 ACAGTAGAAGAAACCTTAATGTTTGCAGCTGAGTTTCGCTTACCAAGAAGCTTGCCTAAA 620
|| || |||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 541 ACTGTGGAAGAAACCTTAATGTTTGCAGCTGAGTTTCGATTACCAAGAAGCTTACCTAAA 600
Query 621 TCCAAGAAGAAGCTTCGAGTTCAAGCCCTAATCGACCAGTTAGGGATAAGAAACGCTGCT 680
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TCCAAGAAGAAGCTTCGAGTTCAAGCCCTAATCGACCAGTTAGGGATAAGAAACGCTGCT 660
Query 681 AAAACAATCATCGGAGATGAAGGGCACCGTGGAATCTCTGGTGGAGAACGAAGGCGAGTC 740
||||||||||| ||||| ||||| |||||||||||||| ||||||||| ||||||||||
Sbjct 661 AAAACAATCATTGGAGACGAAGGACACCGTGGAATCTCCGGTGGAGAAAGAAGGCGAGTT 720
Query 741 TCAATCGGAATCGACATCATCCACGACCCGATTGTTCTCTTCCTCGACGAACCTACTTCT 800
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCGATCGGAATCGATATCATCCACGACCCGATTGTTCTCTTCCTCGACGAACCTACTTCT 780
Query 801 GGTTTAGATTCCACAAGTGCATTCATGGTGGTTAAAGTGTTGAAGAGAATAGCAGAGAGT 860
|||||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||
Sbjct 781 GGTTTAGATTCCACAAGTGCTTTCATGGTGGTTAAAGTATTGAAGAGAATCGCAGAGAGT 840
Query 861 GGCAGTATCGTAATAATGTCAATACATCAGCCAAGTCACAGAGTTCTCAGTTTGCTTGAT 920
||||||||| | ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 841 GGCAGTATCATTATAATGTCAATACATCAGCCAAGTCACAGAGTTCTCAGTTTACTTGAT 900
Query 921 CGTCTTATCTTCTTGTCACGTGGTCACACCGTCTTCAGTGGTTCCCCGGCGAGTCTACCG 980
||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||
Sbjct 901 CGTCTTATCTTCTTGTCACGTGGACACACCGTCTTTAGTGGTTCTCCGGCGAGTCTACCG 960
Query 981 ACCTTTTTCGCCGGATTTGGCAATCCGATACCAGAAAACGAGAATCAAACGGAGTTTGCA 1040
| |||||||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 961 AGCTTTTTCGCCGGGTTCGGTAATCCGATACCGGAAAACGAGAATCAAACGGAGTTTGCA 1020
Query 1041 CTCGATCTCATCAGAGAACTCGAAGGATCGGCTGGAGGAACCAGAGGATTAGTTGAATTC 1100
|||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1021 CTCGATCTAATCAGAGAACTCGAAGGATCAGCTGGAGGAACAAGAGGATTAGTTGAATTC 1080
Query 1101 AACAAGAAATGGCAAGAGATGAAAAAACAGAGCAATCCTCAAACCCTAACTCCGCCGGCT 1160
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 AACAAGAAATGGCAAGAGATGAAGAAACAGAGCAATCCTCAAACCCTAACTCCGCCGGCT 1140
Query 1161 TCTCCAAACCCAAATTTAACCCTGAAAGAGGCGATTTCCGCCAGCATAAGCAGAGGTAAA 1220
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |||
Sbjct 1141 TCTCCAAACCCAAATTTAACCTTGAAAGAAGCGATTTCCGCCAGCATAAGCAGAGGAAAA 1200
Query 1221 CTAGTCTCCGGCGGCGGCGCTGGTTCCTCCGTTATAAACCACGGTGGCGGAACCTTAGCC 1280
||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1201 CTAGTCTCCGGTGGCGGCGGTGGTTCCTCCGTCATAAACCACGGTGGCGGAACCTTAGCC 1260
Query 1281 GTCCCCGCATTCGCGAATCCGTTCTGGATGGAAATCAAAACTCTCACCCA-ACGCTCAAT 1339
||||| ||||||||||||||||||||||| |||||||||||||||||| | |||||||||
Sbjct 1261 GTCCCTGCATTCGCGAATCCGTTCTGGATCGAAATCAAAACTCTCACC-AGACGCTCAAT 1319
Query 1340 CCTCAACTCCCGAAGACAACCTGAACTACTCGGAATGCGATTAGCCACCGTAATCGTCAC 1399
||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1320 CCTCAACTCCCGACGACAACCGGAGCTACTCGGAATGCGATTAGCCACCGTAATCGTCAC 1379
Query 1400 CGGTTTCATCTTAGCCACCGTGTTTTGGCGATTAGACAATTCACCAAAAGGCGTACAAGA 1459
||| ||||||||||||||||| || |||||||| || |||||||||||||| || |||||
Sbjct 1380 CGGATTCATCTTAGCCACCGTATTCTGGCGATTGGATAATTCACCAAAAGGAGTTCAAGA 1439
Query 1460 GCGGCTAGGGTTCTTCGCCTTCGCGATGTCAACAATGTTCTACACTTGCGCCGATGCTCT 1519
|||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 1440 GCGGTTAGGGTTCTTCGCATTCGCAATGTCAACAATGTTCTACACTTGCGCCGATGCTCT 1499
Query 1520 TCCCGTATTTCTCCAGGAACGTTACATCTTCATGAGAGAAACAGCTTACAACGCATACCG 1579
|||||| || |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1500 TCCCGTGTTCCTCCAGGAACGTTACATCTTCATGAGAGAAACAGCTTACAACGCTTACCG 1559
Query 1580 GAGATCCTCCTACGTTCTCTCTCACGCCATTGTTACCTTCCCTTCCCTCATCTTCCTCTC 1639
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1560 GAGATCCTCCTACGTTCTCTCTCACGCCATTGTTACCTTCCCTTCGCTCATCTTCCTCTC 1619
Query 1640 TTTAGCTTTCGCAGTGACGACGTTTTGGGCTGTTGGGCTTGAAGGAGGTCC-AATGGGCT 1698
|||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct 1620 TTTAGCTTTCGCAGTGACGACGTTTTGGGCTGTTGGGCTTGAAGGAGG-CCTAATGGGCT 1678
Query 1699 TTTTGTTCTATTGCTTAATCATCTTAGCCTCTTTCTGGTCCGGAAGCTCCTTCGTGACCT 1758
|||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1679 TTTTATTCTACTGCTTAATCATCTTAGCCTCTTTCTGGTCCGGAAGCTCCTTCGTGACTT 1738
Query 1759 TCTTATCCGGCGTCGTTCCACATGTGATGTTAGGCTACACGATCGTTGTTGCTATTTTAG 1818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1739 TCTTATCCGGCGTCGTTCCACATGTGATGTTAGGCTACACGATCGTTGTTGCTATTTTAG 1798
Query 1819 CTTACTTTTTGCTTTTCAGTGGCTTCTTCATCAACAGAGATCGAATCCCTAAGTATTGGA 1878
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1799 CTTACTTCTTGCTTTTCAGTGGCTTCTTCATCAACAGAGATCGAATCCCTCAGTATTGGA 1858
Query 1879 TTTGGTTTCATTATCTTTCTCTGGTTAAGTATCCGTACGAGGCGGTTCTTCAGAACGAAT 1938
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 1859 TTTGGTTTCATTATCTTTCTCTGGTTAAGTATCCATACGAGGCGGTTCTTCAGAACGAGT 1918
Query 1939 TCTCGGATCCTACGGAATGTTTTGTGAGAGGTGTTCAGCTTTTCGACAACTCGCCTTTGG 1998
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1919 TCTCGGATCCTACAGAATGTTTTGTGAGAGGTGTTCAGCTTTTCGACAACTCGCCTTTGG 1978
Query 1999 GAGAATTGACGTATGGAATGAAGCTGAGGCTTTTGGATTCTGTGAGCCGATCGATTGGGA 2058
|||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
Sbjct 1979 GAGAATTGACGTATGGGATGAAGCTGAGGCTTTTGGATTCTGTGAGCCGGTCGATAGGTA 2038
Query 2059 TGAGGATATCTAGCTCTACGTGTTTAACGACGGGTGCTGATATTTTGAAGCAGCAAGGAG 2118
|||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 2039 TGAGGATATCGAGCTCTACGTGTTTAACGACGGGTGCTGATGTTCTGAAGCAGCAAGGAG 2098
Query 2119 TGACGCAGCTTAGTAAATGGAATTGCTTGCTTATCACGGTAGGTTTCGGATTCCTTTTTA 2178
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 2099 TGACACAGCTTAGTAAATGGAACTGCTTGCTTATCACGGTAGGTTTCGGATTCCTATTTA 2158
Query 2179 GGGTTTTGTTTTACTTGTGTTTGTTACTTGGGAGCAAGAACAAGAGGAGGT 2229
|| |||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2159 GGATTTTGTTTTACTTGTGTTTGTTGCTTGGGAGCAAAAACAAGAGGAGGT 2209
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111746413170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5