BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938450
Length=927
Score E
Sequences producing significant alignments: (Bits) Value
AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translatio... 931 0.0
> AT3G11400.2 | Symbols: EIF3G1, ATEIF3G1 | eukaryotic translation
initiation factor 3G1 | chr3:3578388-3580569 FORWARD LENGTH=1317
Length=1317
Score = 931 bits (504), Expect = 0.0
Identities = 545/565 (96%), Gaps = 2/565 (0%)
Strand=Plus/Plus
Query 358 GTACCAAAGCAGATGAATCAAAGGCAACAGGAGACGGCTTGTCTCAGCTGGGTAAAGGTG 417
|||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 567 GTACCAAAGCGGATGAATCAAAGGCAACAGGAGATGGCTTGTCTCAGCTGGGTAAAGGTG 626
Query 418 GTGCAGTTCTCATGGTGTGCAGGATATGCCACAAGAAAGGAGATCACTGGACGTCAAAAT 477
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 627 GTGCAGTTCTCATGGTGTGCAGGATATGCCACAAGAAAGGAGATCACTGGACATCAAAAT 686
Query 478 GTCCTTATAAGGATCTAGCTGCAACAACCGATGCCTTCATCGACAAGCCACCCACAGGGG 537
|||| || ||||||||||||||| ||||||||| |||||| |||||||||||||||||||
Sbjct 687 GTCCATACAAGGATCTAGCTGCACCAACCGATGTCTTCATTGACAAGCCACCCACAGGGG 746
Query 538 AATCATCTACCATGTCCGCTGCACCTGGAACTGGCAAGGCCGCATATGTCCCGCCTAGCA 597
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 747 AATCATCTACCATGTCTGCTGCACCTGGAACTGGCAAGGCCGCGTATGTCCCGCCTAGCA 806
Query 598 TGAGAGCAGGTGCAGACAGAAGCGCTGTTGGTTCAGACATGAGGAGGAGGAACGATGAGA 657
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 807 TGAGAGCAGGTGCAGACAGAAGCGCTGTGGGTTCAGACATGAGGAGGAGGAACGATGAGA 866
Query 658 ACTCTGTGCGTGTAACCAACT-TGTCCGAAGATACCCGTGAACCGGACTTGATGGAGCTG 716
||||||||||||||||||| | ||||||| |||||||||||||| |||||||||||||||
Sbjct 867 ACTCTGTGCGTGTAACCAA-TCTGTCCGAGGATACCCGTGAACCTGACTTGATGGAGCTG 925
Query 717 TTCCATCCGTTTGGAGCTGTCACGCGTGTGTATGTGGCCATTGATCAGAAAACTGGAGTG 776
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 926 TTCCACCCGTTTGGAGCTGTCACACGTGTCTATGTGGCCATTGATCAGAAAACTGGAGTG 985
Query 777 AGCAGAGGATTTGGTTTCGTCAATTTCGTGAGCAGAGAAGACGCTCAACGAGCAATCAAC 836
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 986 AGCAGAGGATTTGGTTTCGTCAATTTCGTGAGCAGAGAAGACGCTCAAAGAGCAATCAAC 1045
Query 837 AAATTGAATGGTTATGGTTATGATAACCTCATCCTCAGGGTTGAATGGGCCACTCCAAGA 896
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1046 AAATTGAATGGTTATGGTTATGATAACCTCATCCTCAGGGTTGAATGGGCAACTCCAAGA 1105
Query 897 CCAACCTAGAAAGAAATGTCTGATG 921
|||||||||||||||||||||||||
Sbjct 1106 CCAACCTAGAAAGAAATGTCTGATG 1130
Score = 483 bits (261), Expect = 2e-135
Identities = 321/350 (92%), Gaps = 3/350 (1%)
Strand=Plus/Plus
Query 17 GACGATGACGATGGATTCGCAGGAGAAAA-GAAGCAAGTTCCGATGGGGGGAAATGGACG 75
|||||||||||| ||||||||| | |||| | ||||| ||| ||||||||||||||||||
Sbjct 145 GACGATGACGATCGATTCGCAGCAAAAAACG-AGCAAATTCAGATGGGGGGAAATGGACG 203
Query 76 AAGACGACGATCTGGATTTCCTGCTCCCTCCGAAGCAGGTGATTGGGCCAGACGAGAATG 135
||||||| |||||||||||| |||||||||| |||||||||||||| ||||| |||||||
Sbjct 204 AAGACGAAGATCTGGATTTCTTGCTCCCTCCCAAGCAGGTGATTGGTCCAGATGAGAATG 263
Query 136 GTTTGAAGACGACGATCGAATACAAGTTCAACGATGAGGGCAATAAGGTTAAGATAACGA 195
||||||||||||||||||| ||||| ||||||||||| | |||||||||||||||||||
Sbjct 264 GTTTGAAGACGACGATCGAGTACAAATTCAACGATGAAGAAAATAAGGTTAAGATAACGA 323
Query 196 CTAGGACACGTGTCCGGAAGCTAGCTTCAGCTCGGCTCAACAAACGGGCTATGGAGAGGA 255
|||||||||||||||| ||||||||||| ||||| ||||||||||| || ||||||||||
Sbjct 324 CTAGGACACGTGTCCGCAAGCTAGCTTCTGCTCGACTCAACAAACGAGCCATGGAGAGGA 383
Query 256 GGAACTGGCCTAAGTTTGGAGACGCTGCCAATGAGGAAGCTGGTAGCCATCTCACTATGG 315
|||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 384 GGAACTGGCCTAAGTTCGGAGACGCAGCCAATGAGGAAGCTGGTAGCCATCTCACTATGG 443
Query 316 TTTCCACCGAAGAGATTCTTCTCGAACGACCCAGACCTCCTGGT-ACCAA 364
|||| ||||||||||| ||||||||||||||| || |||||||| |||||
Sbjct 444 TTTCTACCGAAGAGATCCTTCTCGAACGACCCCGAGCTCCTGGTGACCAA 493
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45311200594
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5