BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938451
Length=1405
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55200.1 | Symbols: | Cleavage and polyadenylation specific... 2459 0.0
AT3G55220.1 | Symbols: | Cleavage and polyadenylation specific... 2459 0.0
> AT3G55200.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20460533-20464556
FORWARD LENGTH=3840
Length=3840
Score = 2459 bits (1331), Expect = 0.0
Identities = 1383/1408 (98%), Gaps = 3/1408 (0%)
Strand=Plus/Plus
Query 1 GGGATGCTCTGAGAATTTTCATGATTGATCGTCTTGGTGAAACGTTCAACGAAACAGTGG 60
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2261 GGGATGCTCTGAGAATTTTTATGATTGATCGTCTTGGTGAAACATTCAACGAAACAGTGG 2320
Query 61 TCCCTCTGAGGTACACGCCTAGAAAGTTTGTTCTCCAACCCAAGCGGAAGTTGTTGGTTA 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2321 TCCCTCTGAGGTACACGCCTAGAAAGTTTGTTCTCCATCCCAAGCGGAAGTTGTTGGTTA 2380
Query 121 TTATCGAGAGTGACCAGGGAGCATTCACCGCAGAAGAGCGTGAAGCTGCAAGAAAGGAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2381 TTATCGAGAGTGACCAGGGAGCATTCACCGCAGAAGAGCGTGAAGCTGCAAGAAAGGAGT 2440
Query 181 GCTTCGAGGCTGGTGGAGTGGGAGAAAATGGCAATGGCAATGCAGATCAGATGGAGAATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2441 GCTTCGAGGCTGGTGGAGTGGGAGAAAATGGCAATGGCAATGCAGATCAGATGGAGAATG 2500
Query 241 GTGCGGATGATGAAGATAAGGAAGACCCGCTTTCTGATGAGCAGTACGGTTATCCAAAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2501 GTGCGGATGATGAAGATAAGGAAGACCCGCTTTCTGATGAGCAGTACGGTTATCCAAAAG 2560
Query 301 CAGAGTCTGAAAAGTGGGTTTCTTGCATCAGAATTCTTGATCCCAAGACAGCTACGACAA 360
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 2561 CAGAGTCTGAAAAGTGGGTCTCTTGCATCAGAGTTCTTGATCCCAAGACAGCTACGACAA 2620
Query 361 CTTGTCTCCTGGAACTTCAAGACAACGAAGCTGCATACAGTGTCTGTACGGTGAATTTCC 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2621 CTTGTCTCCTGGAACTTCAGGACAACGAAGCTGCATACAGTGTCTGTACGGTGAATTTCC 2680
Query 421 ATGATAAAGAGTATGGTACATTGTTGGCTGTTGGTACAGTCAAAGGGATGCAGTTCTGGC 480
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2681 ATGATAAAGAGTATGGTACACTGTTGGCTGTTGGTACGGTCAAAGGGATGCAGTTCTGGC 2740
Query 481 CCAAAAAGAATCTAGTGGCTGGGTTCATACATATTTATAGGTTTGTGGAGGAAGGGAAAT 540
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2741 CCAAGAAGAATCTAGTGGCTGGGTTCATACATATTTATAGGTTTGTGGAGGATGGGAAAT 2800
Query 541 CTCTTGAGCTTCTTCATAAGACGCAAGTAGAAGGTGTTCCTCTTGCTCTGTGCCAGTTCC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 CTCTTGAGCTTCTTCATAAGACGCAAGTAGAAGGTGTTCCTCTTGCTCTGTGCCAGTTCC 2860
Query 601 AAGGAAGACTGCTGGCAGGGATCGGACCTGTCCTCAGATTGTATGATTTGGGGAAAAAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2861 AAGGAAGACTGCTGGCAGGGATCGGACCTGTCCTCAGATTGTATGATTTGGGGAAAAAGA 2920
Query 661 GACTGCTTAGGAAATGTGAAAACAAGCTCTTTCCAAACACCATTATCTCTATCCAAACTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2921 GACTGCTTAGGAAATGTGAAAACAAGCTCTTTCCAAACACCATTATCTCTATCCAAACTT 2980
Query 721 ACCGTGACCGTATATACGTTGGTGACATTCAGGAGTCTTTCCATTACTGCAAGTACAGGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2981 ACCGTGACCGTATATACGTTGGTGACATTCAGGAGTCTTTCCATTACTGCAAGTACAGGC 3040
Query 781 GCGACGAGAATCAGCTATACATATTTGCGGATGACTGCGTGCCGAGGTGGCTGACAGCAT 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3041 GCGACGAGAATCAGCTGTACATATTTGCGGATGACTGCGTGCCGAGGTGGCTGACAGCAT 3100
Query 841 CGCACCATGTGGATTTCGATACCATGGCAGGTGCAGATAAGTTTGGGAATGTGTATTTTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3101 CGCACCATGTGGATTTCGATACCATGGCAGGTGCAGATAAGTTTGGGAATGTGTATTTTG 3160
Query 901 TGCGGTTGCCTCAGGATCTGTCTGAGGAGATAGAAGAAGACCCGACAGGCGGGAAGATAA 960
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 3161 TGCGGTTGCCTCAGGATCTGTCGGAGGAGATAGAAGAAGACCCGACTGGCGGGAAGATCA 3220
Query 961 AGTGGGAGCAAGGAAAGCTGAATGGAGCACCGAACAAAGTGGATGAGATAGTACAGTTCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3221 AGTGGGAGCAAGGAAAGCTGAATGGAGCACCGAACAAAGTGGATGAGATAGTACAGTTCC 3280
Query 1021 ATGTTGGGGACGTAGTGACGTGCTTGCAGAAAGCTTCGATGATCCCAGGTGGATCGGAAT 1080
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3281 ATGTTGGGGACGTTGTGACGTGCTTGCAGAAAGCTTCGATGATCCCAGGTGGATCGGAAT 3340
Query 1081 CCATAATGTATGGAACAGTGATGGGTAGCATAGGGGCATTACATGCTTTCACATCGCGTG 1140
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3341 CGATAATGTATGGAACAGTGATGGGTAGCATAGGGGCATTACATGCTTTCACATCCCGTG 3400
Query 1141 ATGATGTGGATTTCTTCTCTCATCTGGAGATGCACATGAGGCAGGAGTATCCTCCTCTCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3401 ATGATGTGGATTTCTTCTCTCATCTGGAGATGCACATGAGGCAGGAGTATCCTCCTCTCT 3460
Query 1201 GCGGGAGAGACCACATGGCTTACAGATCTGCATATTTTCCGGTCAAGGACGTGATAGATG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3461 GCGGGAGAGACCACATGGCTTACAGATCTGCATATTTTCCGGTCAAGGACGTGATAGATG 3520
Query 1261 GAGATCTGTGTGAGCAGTTCCCGACACTCCCAATGGACTTGCAGAGGAAAATAGCAGACG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3521 GAGATCTGTGTGAGCAGTTCCCGACACTCCCAATGGACTTGCAGAGGAAAATAGCAGACG 3580
Query 1321 AGTTGGATCGAACACCTGCGGAGATTCTGAAGAAGCTCGAAGACGCAAGGAATAAGATCA 1380
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3581 AGCTGGATAGAACACCTGCGGAGATTCTGAAGAAGCTCGAAGACGCAAGGAACAAGATCA 3640
Query 1381 TTTGATAA-ACAC-AAAACAAA-AGAGA 1405
|||||||| |||| |||| | | |||||
Sbjct 3641 TTTGATAACACACGAAAAGAGAGAGAGA 3668
> AT3G55220.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20466921-20470944
REVERSE LENGTH=3840
Length=3840
Score = 2459 bits (1331), Expect = 0.0
Identities = 1383/1408 (98%), Gaps = 3/1408 (0%)
Strand=Plus/Plus
Query 1 GGGATGCTCTGAGAATTTTCATGATTGATCGTCTTGGTGAAACGTTCAACGAAACAGTGG 60
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 2261 GGGATGCTCTGAGAATTTTTATGATTGATCGTCTTGGTGAAACATTCAACGAAACAGTGG 2320
Query 61 TCCCTCTGAGGTACACGCCTAGAAAGTTTGTTCTCCAACCCAAGCGGAAGTTGTTGGTTA 120
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2321 TCCCTCTGAGGTACACGCCTAGAAAGTTTGTTCTCCATCCCAAGCGGAAGTTGTTGGTTA 2380
Query 121 TTATCGAGAGTGACCAGGGAGCATTCACCGCAGAAGAGCGTGAAGCTGCAAGAAAGGAGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2381 TTATCGAGAGTGACCAGGGAGCATTCACCGCAGAAGAGCGTGAAGCTGCAAGAAAGGAGT 2440
Query 181 GCTTCGAGGCTGGTGGAGTGGGAGAAAATGGCAATGGCAATGCAGATCAGATGGAGAATG 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2441 GCTTCGAGGCTGGTGGAGTGGGAGAAAATGGCAATGGCAATGCAGATCAGATGGAGAATG 2500
Query 241 GTGCGGATGATGAAGATAAGGAAGACCCGCTTTCTGATGAGCAGTACGGTTATCCAAAAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2501 GTGCGGATGATGAAGATAAGGAAGACCCGCTTTCTGATGAGCAGTACGGTTATCCAAAAG 2560
Query 301 CAGAGTCTGAAAAGTGGGTTTCTTGCATCAGAATTCTTGATCCCAAGACAGCTACGACAA 360
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 2561 CAGAGTCTGAAAAGTGGGTCTCTTGCATCAGAGTTCTTGATCCCAAGACAGCTACGACAA 2620
Query 361 CTTGTCTCCTGGAACTTCAAGACAACGAAGCTGCATACAGTGTCTGTACGGTGAATTTCC 420
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2621 CTTGTCTCCTGGAACTTCAGGACAACGAAGCTGCATACAGTGTCTGTACGGTGAATTTCC 2680
Query 421 ATGATAAAGAGTATGGTACATTGTTGGCTGTTGGTACAGTCAAAGGGATGCAGTTCTGGC 480
|||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 2681 ATGATAAAGAGTATGGTACACTGTTGGCTGTTGGTACGGTCAAAGGGATGCAGTTCTGGC 2740
Query 481 CCAAAAAGAATCTAGTGGCTGGGTTCATACATATTTATAGGTTTGTGGAGGAAGGGAAAT 540
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2741 CCAAGAAGAATCTAGTGGCTGGGTTCATACATATTTATAGGTTTGTGGAGGATGGGAAAT 2800
Query 541 CTCTTGAGCTTCTTCATAAGACGCAAGTAGAAGGTGTTCCTCTTGCTCTGTGCCAGTTCC 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2801 CTCTTGAGCTTCTTCATAAGACGCAAGTAGAAGGTGTTCCTCTTGCTCTGTGCCAGTTCC 2860
Query 601 AAGGAAGACTGCTGGCAGGGATCGGACCTGTCCTCAGATTGTATGATTTGGGGAAAAAGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2861 AAGGAAGACTGCTGGCAGGGATCGGACCTGTCCTCAGATTGTATGATTTGGGGAAAAAGA 2920
Query 661 GACTGCTTAGGAAATGTGAAAACAAGCTCTTTCCAAACACCATTATCTCTATCCAAACTT 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2921 GACTGCTTAGGAAATGTGAAAACAAGCTCTTTCCAAACACCATTATCTCTATCCAAACTT 2980
Query 721 ACCGTGACCGTATATACGTTGGTGACATTCAGGAGTCTTTCCATTACTGCAAGTACAGGC 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2981 ACCGTGACCGTATATACGTTGGTGACATTCAGGAGTCTTTCCATTACTGCAAGTACAGGC 3040
Query 781 GCGACGAGAATCAGCTATACATATTTGCGGATGACTGCGTGCCGAGGTGGCTGACAGCAT 840
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 3041 GCGACGAGAATCAGCTGTACATATTTGCGGATGACTGCGTGCCGAGGTGGCTGACAGCAT 3100
Query 841 CGCACCATGTGGATTTCGATACCATGGCAGGTGCAGATAAGTTTGGGAATGTGTATTTTG 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3101 CGCACCATGTGGATTTCGATACCATGGCAGGTGCAGATAAGTTTGGGAATGTGTATTTTG 3160
Query 901 TGCGGTTGCCTCAGGATCTGTCTGAGGAGATAGAAGAAGACCCGACAGGCGGGAAGATAA 960
|||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |
Sbjct 3161 TGCGGTTGCCTCAGGATCTGTCGGAGGAGATAGAAGAAGACCCGACTGGCGGGAAGATCA 3220
Query 961 AGTGGGAGCAAGGAAAGCTGAATGGAGCACCGAACAAAGTGGATGAGATAGTACAGTTCC 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3221 AGTGGGAGCAAGGAAAGCTGAATGGAGCACCGAACAAAGTGGATGAGATAGTACAGTTCC 3280
Query 1021 ATGTTGGGGACGTAGTGACGTGCTTGCAGAAAGCTTCGATGATCCCAGGTGGATCGGAAT 1080
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3281 ATGTTGGGGACGTTGTGACGTGCTTGCAGAAAGCTTCGATGATCCCAGGTGGATCGGAAT 3340
Query 1081 CCATAATGTATGGAACAGTGATGGGTAGCATAGGGGCATTACATGCTTTCACATCGCGTG 1140
| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 3341 CGATAATGTATGGAACAGTGATGGGTAGCATAGGGGCATTACATGCTTTCACATCCCGTG 3400
Query 1141 ATGATGTGGATTTCTTCTCTCATCTGGAGATGCACATGAGGCAGGAGTATCCTCCTCTCT 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3401 ATGATGTGGATTTCTTCTCTCATCTGGAGATGCACATGAGGCAGGAGTATCCTCCTCTCT 3460
Query 1201 GCGGGAGAGACCACATGGCTTACAGATCTGCATATTTTCCGGTCAAGGACGTGATAGATG 1260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3461 GCGGGAGAGACCACATGGCTTACAGATCTGCATATTTTCCGGTCAAGGACGTGATAGATG 3520
Query 1261 GAGATCTGTGTGAGCAGTTCCCGACACTCCCAATGGACTTGCAGAGGAAAATAGCAGACG 1320
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3521 GAGATCTGTGTGAGCAGTTCCCGACACTCCCAATGGACTTGCAGAGGAAAATAGCAGACG 3580
Query 1321 AGTTGGATCGAACACCTGCGGAGATTCTGAAGAAGCTCGAAGACGCAAGGAATAAGATCA 1380
|| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3581 AGCTGGATAGAACACCTGCGGAGATTCTGAAGAAGCTCGAAGACGCAAGGAACAAGATCA 3640
Query 1381 TTTGATAA-ACAC-AAAACAAA-AGAGA 1405
|||||||| |||| |||| | | |||||
Sbjct 3641 TTTGATAACACACGAAAAGAGAGAGAGA 3668
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 69226551555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5