BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938452
Length=271
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55220.1 | Symbols: | Cleavage and polyadenylation specific... 355 1e-97
AT3G55200.1 | Symbols: | Cleavage and polyadenylation specific... 350 5e-96
> AT3G55220.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20466921-20470944
REVERSE LENGTH=3840
Length=3840
Score = 355 bits (192), Expect = 1e-97
Identities = 214/225 (95%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 21 ATGTATCTGTACAGTCTTACTCTGCAGCAGGCGACGGGAATCATCTGCGCCATCAACGGG 80
||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||
Sbjct 1 ATGTATCTGTACAGTCTTACTCTGCAGCAGGCGACCGGAATCGTCTGCGCAATCAACGGG 60
Query 81 AACTTCTCCGGCGGGAAGACACAGGAGATTGCGGTAGCTCGTGGGAAGATTCTGGATCTT 140
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 61 AACTTCTCCGGCGGGAAGACACAGGAGATTGCGGTAGCTCGTGGCAAGATTTTGGATCTT 120
Query 141 CTCCGTCCGGACGAGAACGGTAAGATCCAGACGATACACTCTGTGGAAGTATTCGGTGCA 200
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 121 CTCCGTCCCGACGAGAACGGTAAGATCCAGACGATACACTCTGTAGAAGTATTTGGTGCA 180
Query 201 ATTAGATCTTTAGCTCAGTTTAGGTTGACTGGTGCGCAAAAGGAT 245
|||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 181 ATTAGATCCCTAGCTCAGTTTAGGTTGACTGGTGCGCAGAAGGAT 225
> AT3G55200.1 | Symbols: | Cleavage and polyadenylation specificity
factor (CPSF) A subunit protein | chr3:20460533-20464556
FORWARD LENGTH=3840
Length=3840
Score = 350 bits (189), Expect = 5e-96
Identities = 213/225 (95%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 21 ATGTATCTGTACAGTCTTACTCTGCAGCAGGCGACGGGAATCATCTGCGCCATCAACGGG 80
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||
Sbjct 1 ATGTATCTGTACAGTCTTACTCTGCAGCAGGCGACGGGAATCGTCTGCGCAATCAACGGG 60
Query 81 AACTTCTCCGGCGGGAAGACACAGGAGATTGCGGTAGCTCGTGGGAAGATTCTGGATCTT 140
||||| |||||||| ||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 61 AACTTTTCCGGCGGCAAGACACAGGAGATTGCGGTAGCTCGTGGCAAGATTTTGGATCTT 120
Query 141 CTCCGTCCGGACGAGAACGGTAAGATCCAGACGATACACTCTGTGGAAGTATTCGGTGCA 200
|||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 121 CTCCGTCCCGACGAGAACGGTAAGATCCAGACGATACACTCTGTAGAAGTATTTGGTGCA 180
Query 201 ATTAGATCTTTAGCTCAGTTTAGGTTGACTGGTGCGCAAAAGGAT 245
|||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 181 ATTAGATCCCTAGCTCAGTTTAGGTTGACTGGTGCGCAGAAGGAT 225
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12416134003
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5