BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938456
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55252.1 | Symbols: | Plant self-incompatibility protein S1... 638 0.0
AT3G54925.1 | Symbols: | Plant self-incompatibility protein S1... 593 4e-169
AT3G55254.1 | Symbols: | Plant self-incompatibility protein S1... 534 3e-151
AT3G44274.1 | Symbols: | unknown pseudogene | chr3:15965748-15... 457 6e-128
> AT3G55252.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20480799-20481322 REVERSE LENGTH=524
Length=524
Score = 638 bits (345), Expect = 0.0
Identities = 463/520 (89%), Gaps = 8/520 (2%)
Strand=Plus/Plus
Query 1 CTCTTACATAATTTACCTAGCTATGGCTTTCACAAATAAATCTCATTTTATAATGTTGTT 60
||| |||||||||||| || | ||||||||||||| |||| ||||||||||||||||||
Sbjct 2 CTCCTACATAATTTACTTAACCATGGCTTTCACAAGTAAACCTCATTTTATAATGTTGTG 61
Query 61 TATAATCTCTTCTACTCTTATTCTCTTTGTGTCTGCATTAGATT-TTTCTAATGCTCCAG 119
||| |||| || |||||||||||| |||||||||||||||| || ||||| |||||||||
Sbjct 62 TATGATCTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAG 120
Query 120 CAGAAGCACCAGGC-TCGGACGACGACGGCTTGTTACCTCT-AGCCGAAAAACATGTTGT 177
| ||||||||| | |||| || ||| |||||||||||||| || |||||||||||||||
Sbjct 121 CGGAAGCACCA-ACTTCGGGCGGCGATGGCTTGTTACCTCTAAG-CGAAAAACATGTTGT 178
Query 178 AATTCGCAACAAGGTAAAAAACAGAGAAATATTGAATGTACATTGCAAATCTAGTGAAGA 237
||| ||||||||| ||||||| |||||||| |||||||||||||||| ||||||||||||
Sbjct 179 AATCCGCAACAAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGA 238
Query 238 TGATTTTGGGATTATCCATCTTCCTTGGAATGGTACATGGGGTTTCAGATTTCATGTTAA 297
|||||||||| ||| ||| |||||||||||||| ||||||||||||||||| |||||||
Sbjct 239 TGATTTTGGGCTTAAACATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAA 298
Query 298 CATTTGGAAAAATACGAAATTTCGTTGTCATTTTACATGGCATAAAGGCGGATCTCATTA 357
| ||| |||| |||||||||||||||||||||||| |||||||| || |||||||||||
Sbjct 299 CTTTTTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATAATGGTGGATCTCATTA 358
Query 358 TTTTTATATATTTAAAGTATCAAGAGATGATAGTGCATTTGGACAAATTCC-AGTTTGTA 416
||||||||||||||||| |||||||||||||||| || ||||| || |||| | ||||||
Sbjct 359 TTTTTATATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGAACTTCCGA-TTTGTA 417
Query 417 AAGAATGTATATGGGAAGTGGGAAAAGATGATGAAAACCCTATTTGTCGTATTCCTCGTG 476
||||||||||||||||||| ||| |||| |||| || |||||||||||||||| ||||||
Sbjct 418 AAGAATGTATATGGGAAGTAGGACAAGACGATGTAACCCCTATTTGTCGTATTTCTCGTG 477
Query 477 AGAAGGAAAACAATTCATACTGTTTCAAATGGGAGGATGG 516
||||| |||||||| ||||||||||| |||||||||||||
Sbjct 478 AGAAGAAAAACAATCCATACTGTTTCGAATGGGAGGATGG 517
> AT3G54925.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20349435-20349980 REVERSE LENGTH=546
Length=546
Score = 593 bits (321), Expect = 4e-169
Identities = 462/530 (87%), Gaps = 9/530 (2%)
Strand=Plus/Plus
Query 9 TAATTTACCTAGCTATGGCTTTCACA-AATAAATCTCATTTTATAATGTTGTTTATAATC 67
|||||||| || |||| |||||| | |||||| || |||||||||| || ||| | |||
Sbjct 15 TAATTTACATAATTATGACTTTCA-ATAATAAACCTTATTTTATAATATTATTTGTGATC 73
Query 68 TCTTCTACTCTTATTCTCTTTGTGTCTGCATTAGATTTTTCTAATGCTCCAGCAGAAGCA 127
| ||||||||||||||| ||||||| |||||||||||||||||||||||| || ||| ||
Sbjct 74 TATTCTACTCTTATTCTTTTTGTGTATGCATTAGATTTTTCTAATGCTCCTGCCGAATCA 133
Query 128 CCAGGCTCGGACGAC-GACGGCTTGTTACCTCTAGCCGAAAAACATGTTGTAATTCGCAA 186
||| | |||| | || |||||||| ||||||||||| |||||||||||||||||| |||
Sbjct 134 CCAAGTTCGGGC-ACTGACGGCTTTTTACCTCTAGCTAAAAAACATGTTGTAATTCACAA 192
Query 187 CAAGGTAAAAAACAGAGAAATATTGAATGTACATTGCAAATCTAGTGAAGATGATTTTGG 246
||||||||||| | |||||| |||||||||||||||| ||| |||||||||||||||||
Sbjct 193 TAAGGTAAAAAATAAAGAAATTTTGAATGTACATTGCAGATCCAGTGAAGATGATTTTGG 252
Query 247 GATTATCCATCTTCCTTGGAATGGTACATGGGGTTTCAGATTTCATGTTAACATTTGGAA 306
|| ||||| ||||||||||| | ||||||| |||||| |||||||| ||| |||||||
Sbjct 253 AATGGTCCATATTCCTTGGAATAGCACATGGGATTTCAGCTTTCATGTCAACTTTTGGAA 312
Query 307 AAATACGAAATTTCGTTGTCATTTTACATGGCATAAAGGCGGATCTCATTATTTTTATAT 366
|| |||||||||||||||||| ||||| |||||||| |||||||||||||| ||||||||
Sbjct 313 AACTACGAAATTTCGTTGTCACTTTACTTGGCATAATGGCGGATCTCATTACTTTTATAT 372
Query 367 ATTTAAAGTATCA-AGAGATGATAGTGCATTTGGACAAATTCCAGTTTGTAAAGAATGTA 425
|||||||||| | |||||||||| | || ||||| |||| ||||||||||||||||
Sbjct 373 -TTTAAAGTAT-ACAGAGATGATAATCCAGATGGACGTTTTCCCGTTTGTAAAGAATGTA 430
Query 426 TATGGGAAGTGGGAAAAGATGATGAAAACCCTATTTGTCGTATTCCTCGTGAGAAGGAAA 485
|||||||||| |||| |||||||| ||| ||||||||||||||||||||||| || ||||
Sbjct 431 TATGGGAAGTAGGAACAGATGATGGAAATCCTATTTGTCGTATTCCTCGTGATAA-GAAA 489
Query 486 A-CAATTCATACTGTTTCAAATGGGAGGATGGTCCTTAAGAAAGaaaaaa 534
| |||| ||||||||||||||||||||||||||||||||| |||||||||
Sbjct 490 AGCAATCCATACTGTTTCAAATGGGAGGATGGTCCTTAAGTAAGAAAAAA 539
> AT3G55254.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20482190-20482813 REVERSE LENGTH=624
Length=624
Score = 534 bits (289), Expect = 3e-151
Identities = 464/546 (85%), Gaps = 22/546 (4%)
Strand=Plus/Plus
Query 5 TACATAATTTACCTAGCT-ATGGCTTTCACA-AATAAATCTCATTTTATAATGTTGTTTA 62
|||||||||||||||| | ||| |||| | | ||||||||||||||| ||||||| ||||
Sbjct 6 TACATAATTTACCTAG-TCATGACTTTTA-ATAATAAATCTCATTTTCTAATGTTATTTA 63
Query 63 TAATCTCTTCTACTCTT-ATTCTCTTTGTGTCTGCATTAGATTTTTC-TAATGCTCCAGC 120
| |||| ||||||| || ||||| ||||||||||| ||||| ||||| ||||||||| ||
Sbjct 64 TGATCTTTTCTACT-TTAATTCTTTTTGTGTCTGCTTTAGA-TTTTCTTAATGCTCCCGC 121
Query 121 AGAAGCACCAGGCTCGGACGAC-GACGGCTTGTTACCTCTAGCCGAAAAACATGTTGTAA 179
|||| ||||| | |||| | | ||||| || |||||||||||| |||||||||||||||
Sbjct 122 AGAATCACCAAGTTCGGGTG-CTGACGGTTTCTTACCTCTAGCCAAAAAACATGTTGTAA 180
Query 180 TTCGCAACAAGGTAAAAAACAGAGAAATATTGAATGTACATTGCAAATCTAGTGAAGATG 239
| ||||| ||||||||| |||||||| |||||||||||||||| ||| |||||| |||
Sbjct 181 TCCGCAATGTGGTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCCAGTGAACATG 240
Query 240 ATTTTGGGATTATCCATCTTCCTTGGAATGGTACATGGGGTTTCAGATTTCATGTTAACA 299
|||||||||| ||||| ||||||||||||||||||||| |||||| ||||| || |||
Sbjct 241 ATTTTGGGATGGTCCATATTCCTTGGAATGGTACATGGGATTTCAGCTTTCACGTCAACT 300
Query 300 TTTGGAAAAATACGAAATTTCGTTGTCATTTTACATGGCATAAAGGCGGATCTCATTATT 359
||||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||| |
Sbjct 301 TTTGGAAAAATACCAAATTTCGTTGTCACTTTACTTGGCATAATGGCGGATCTCATTACT 360
Query 360 TTTATATATTTAAAGTAT-CAAGAGATGATAGTGCATTTGGACAAATTCCAGTTTGTAAA 418
|| |||| |||||||||| ||| |||||||| | || ||||| ||||||||||||||
Sbjct 361 TTAATATTTTTAAAGTATACAA-AGATGATAATCCAGATGGACGTTTTCCAGTTTGTAAA 419
Query 419 GAATGTATATGGGAAGTGGGAAAAGATGATGAAAAC--CC-TATTTGTCGTATTCCTCGT 475
||||||||||||||||| |||||| ||| ||| ||| || ||||||||||||| ||||
Sbjct 420 GAATGTATATGGGAAGTAGGAAAATATGGTGATAACGGCCATATTTGTCGTATTGTTCGT 479
Query 476 GA-GAAGGAAAACAATT-CAT-ACTGTTTCAAATGGGAGGATGGTCCTTAAGAAAGaaaa 532
|| | ||| | || || | | ||||||| |||||| | ||||||||||||||| |||||
Sbjct 480 GATG--GGAGA-CATTTGCCTTACTGTTTTAAATGGAAAGATGGTCCTTAAGAA-GAAAA 535
Query 533 aaaaaa 538
||||||
Sbjct 536 AAAAAA 541
> AT3G44274.1 | Symbols: | unknown pseudogene | chr3:15965748-15966251
REVERSE LENGTH=504
Length=504
Score = 457 bits (247), Expect = 6e-128
Identities = 417/498 (84%), Gaps = 15/498 (3%)
Strand=Plus/Plus
Query 35 AATAAATCTCATTTTATAATGTTGTTTATAATCTCTTCTACTCTTATTCTCTTTGTGTCT 94
||||||||| |||||||||| || ||||| |||||||||||| ||||| | ||||| |||
Sbjct 13 AATAAATCTTATTTTATAATATTATTTATGATCTCTTCTACTTTTATTTTTTTTGTATCT 72
Query 95 GCATTAGATTTTTCTAATGCTCCAGCAGAAGCACCAGGCTCGGACGAC-GACGGCTTGTT 153
||| || ||||| |||||||||| || ||||||||| | | ||| | ||||| || ||
Sbjct 73 GCACTACATTTTCCTAATGCTCCCGCGGAAGCACCAAGTTAGGA-TCCTGACGGATTCTT 131
Query 154 ACCTCTAGCCGAAAAACATGTTGTAATTCGCAACAAGGTAAAAAACAGAGAAATATTGAA 213
|||||||||| |||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 132 ACCTCTAGCCAAAAAACATGTTGTAATCCGCAACAAGGTAAAAAACAGAGAAATTTTGAA 191
Query 214 TGTACATTGCAAATCTAGTGAAGATGATTTTGGGAT-TATCCATCTTCCTTGGAATGGTA 272
||||||||| | ||| ||| |||||||||||||| | ||||| |||||||||||||||
Sbjct 192 TGTACATTGTAGATCCAGTAAAGATGATTTTGGG-TGGGTCCATATTCCTTGGAATGGTA 250
Query 273 CATGGGGTTTCAGATTTCATGTTAACATTTGGAAAAATACGAAATTTCGTTGTCATTTTA 332
|||||| ||| || |||||||| ||| |||||||||||||||||||||||||||| ||||
Sbjct 251 CATGGGATTTTAGCTTTCATGTCAACTTTTGGAAAAATACGAAATTTCGTTGTCACTTTA 310
Query 333 CATGGCATAA-AGGCGGATCTCATTATTTTTATATATTTAAAGTATCAAGAGATGATAGT 391
| |||||||| || |||||||||||| ||| |||| ||||||||||| |||||||||| |
Sbjct 311 CTTGGCATAATAG-CGGATCTCATTACTTTAATATTTTTAAAGTATCTAGAGATGATAAT 369
Query 392 GCATTTGGACAAATTCCAGTTTGTAAAGAATGTATATGGGAAGTGGGAAAAGATGATGAA 451
|| |||| || ||||||||||| ||||||| |||||||| |||||| ||| |||
Sbjct 370 CCAACAAGACATTTTTCAGTTTGTAAAAAATGTATGTGGGAAGTAGGAAAATATGGTGAT 429
Query 452 AAC--CC-TATTTGTCGTATTCCTCGTGAGAAGGAAAACAATT--CATACT-GTTTCAAA 505
||| || ||||||||||||| ||| | ||||| | | || | | || |||| |||
Sbjct 430 AACGGCCATATTTGTCGTATTGTTCG-G-GAAGGGGGATATTTGTCTT-CTTGTTTTAAA 486
Query 506 TGGGAGGATGGTCCTTAA 523
||||| ||||||||||||
Sbjct 487 TGGGAAGATGGTCCTTAA 504
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26021288146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5