BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938457
Length=542
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55252.1 | Symbols: | Plant self-incompatibility protein S1... 538 2e-152
AT3G55254.1 | Symbols: | Plant self-incompatibility protein S1... 521 2e-147
> AT3G55252.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20480799-20481322 REVERSE LENGTH=524
Length=524
Score = 538 bits (291), Expect = 2e-152
Identities = 424/487 (87%), Gaps = 14/487 (3%)
Strand=Plus/Plus
Query 1 TCCTACATTATTTACCCAACCATGGCTTTCACTAA-TAAACCTCATTTTATATTGATGTT 59
|||||||| |||||| ||||||||||||||| || |||||||||||||||| || |||
Sbjct 3 TCCTACATAATTTACTTAACCATGGCTTTCAC-AAGTAAACCTCATTTTATAATGTTGTG 61
Query 60 TATGATCTCTTTTATTCTTATTCTTTTTGTGTCTGCATTAGATT-TGTCAAATGCTCCAG 118
|||||||| || || |||||||||||||||||||||||||| || | || |||||||||
Sbjct 62 TATGATCTATTATACTCTTATTCTTTTTGTGTCTGCATTAG-TTCTTTCTGATGCTCCAG 120
Query 119 CAGAAGCCCCAACTTCGGACGGCGACGGCTTGTTACCT-TTAGCCGGAAAACATGTTGTA 177
| ||||| |||||||||| |||||| |||||||||||| | || || |||||||||||||
Sbjct 121 CGGAAGCACCAACTTCGGGCGGCGATGGCTTGTTACCTCTAAG-CGAAAAACATGTTGTA 179
Query 178 ATCCACAACAAAG-TAAAAAACAGACAAATCTTGAATGTACATTGCAGATCTAGTGAGGA 236
|||| |||| ||| ||||||| ||| |||| |||||||||||||||||||||||||| ||
Sbjct 180 ATCCGCAAC-AAGTTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCTAGTGAAGA 238
Query 237 TGATTTTGGGATGGTCCATATTCCATGGAATGGTACATGGGATTTCAGATTTCATGTTAA 296
|||||||||| | |||||||| ||||||||| |||||| |||||||||| |||||||
Sbjct 239 TGATTTTGGGCTTAAACATATTCCTTGGAATGGTGCATGGGGTTTCAGATTTTATGTTAA 298
Query 297 CTTTTCGAAAACTACGAAATTTCGTTGTCATTTTACATGGTATAGA-GGCGGATCTCATT 355
||||| ||||||||||||||||||||||||||||| ||| ||| | || ||||||||||
Sbjct 299 CTTTTTTAAAACTACGAAATTTCGTTGTCATTTTACGTGGCATA-ATGGTGGATCTCATT 357
Query 356 ATTTTTATATTTTTAAAGTATCAAGAGATGATAGTCCATTTGGACATTTTCC-AGTTTGT 414
|||||||||| ||||||| ||||||||||||||||||| ||||| | |||| | |||||
Sbjct 358 ATTTTTATATATTTAAAGCATCAAGAGATGATAGTCCAGTTGGAGAACTTCCGA-TTTGT 416
Query 415 AAAGAATGTATATGGGAAGTGGGAAAAGATGATGAAAACCCTATTTGTCGTATTGT-TCG 473
|||||||||||||||||||| ||| |||| |||| || |||||||||||||||| | |||
Sbjct 417 AAAGAATGTATATGGGAAGTAGGACAAGACGATGTAACCCCTATTTGTCGTATT-TCTCG 475
Query 474 TGAAAAG 480
||| |||
Sbjct 476 TGAGAAG 482
> AT3G55254.1 | Symbols: | Plant self-incompatibility protein
S1 family | chr3:20482190-20482813 REVERSE LENGTH=624
Length=624
Score = 521 bits (282), Expect = 2e-147
Identities = 467/554 (84%), Gaps = 22/554 (4%)
Strand=Plus/Plus
Query 2 CCTACATTATTTACCCAACCATGGCTTTCACTAATAAACCTCATTTTATATTGATGTTTA 61
||||||| ||||||| | |||| |||| | ||||||| |||||||| || || | ||||
Sbjct 4 CCTACATAATTTACCTAGTCATGACTTTTAATAATAAATCTCATTTTCTAATGTTATTTA 63
Query 62 TGATCTCTTT-TA-TTCTTATTCTTTTTGTGTCTGCATTAGATTTGTC-AAATGCTCCAG 118
|||||| ||| || || | ||||||||||||||||| |||||||| || |||||||| |
Sbjct 64 TGATCT-TTTCTACTT-TAATTCTTTTTGTGTCTGCTTTAGATTT-TCTTAATGCTCCCG 120
Query 119 CAGAAGCCCCAACTTCGGACG-GC-GACGGCTTGTTACCTTTAGCCGGAAAACATGTTGT 176
||||| | |||| ||||| | || ||||| || |||||| ||||| ||||||||||||
Sbjct 121 CAGAATCACCAAGTTCGG--GTGCTGACGGTTTCTTACCTCTAGCCAAAAAACATGTTGT 178
Query 177 AATCCACAACAAAGTAAAAAACAGACAAATCTTGAATGTACATTGCAGATCTAGTGAGGA 236
||||| ||| |||||||| ||| |||| |||||||||||||||||||| ||||| |
Sbjct 179 AATCCGCAATGTGGTAAAAAATAGAGAAATTTTGAATGTACATTGCAGATCCAGTGAACA 238
Query 237 TGATTTTGGGATGGTCCATATTCCATGGAATGGTACATGGGATTTCAGATTTCATGTTAA 296
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||| || ||
Sbjct 239 TGATTTTGGGATGGTCCATATTCCTTGGAATGGTACATGGGATTTCAGCTTTCACGTCAA 298
Query 297 CTTTTCGAAAACTACGAAATTTCGTTGTCATTTTACATGGTATAGA-GGCGGATCTCATT 355
||||| ||||| ||| |||||||||||||| ||||| ||| ||| | |||||||||||||
Sbjct 299 CTTTTGGAAAAATACCAAATTTCGTTGTCACTTTACTTGGCATA-ATGGCGGATCTCATT 357
Query 356 ATTTTTATATTTTTAAAGTAT-CAAGAGATGATAGTCCATTTGGACATTTTCCAGTTTGT 414
| ||| ||||||||||||||| ||| |||||||| |||| ||||| |||||||||||||
Sbjct 358 ACTTTAATATTTTTAAAGTATACAA-AGATGATAATCCAGATGGACGTTTTCCAGTTTGT 416
Query 415 AAAGAATGTATATGGGAAGTGGGAAAAGATGATGAAAAC--CC-TATTTGTCGTATTGTT 471
|||||||||||||||||||| |||||| ||| ||| ||| || ||||||||||||||||
Sbjct 417 AAAGAATGTATATGGGAAGTAGGAAAATATGGTGATAACGGCCATATTTGTCGTATTGTT 476
Query 472 CGTGAAAAGGGATAC-TT-GCCCTGGTGTTTTAAATGGGAAGATGGTCCTTAAGAT-AAA 528
||||| |||| || || ||| | |||||||||||| |||||||||||||||| |||
Sbjct 477 CGTGAT--GGGAGACATTTGCCTTACTGTTTTAAATGGAAAGATGGTCCTTAAGAAGAAA 534
Query 529 GAGAAAAGTTATTG 542
| ||||||| |||
Sbjct 535 AAAAAAAGTTTTTG 548
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 25971053999
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5