BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938459
Length=2401
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55270.1 | Symbols: MKP1, ATMKP1 | mitogen-activated protein... 3819 0.0
> AT3G55270.1 | Symbols: MKP1, ATMKP1 | mitogen-activated protein
kinase phosphatase 1 | chr3:20496081-20500019 FORWARD LENGTH=3131
Length=3131
Score = 3819 bits (2068), Expect = 0.0
Identities = 2298/2408 (95%), Gaps = 20/2408 (1%)
Strand=Plus/Plus
Query 1 TAATCTTGAGATAAGATTGGATGGTGGGAAGAGAAGATGCGATGGGGAATGATGAGGCTC 60
|||| ||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 356 TAATTTTGAGATAAGATTGGATGGTGGGAAGAGAGGATGCGATGGGGAATGATGAAGCTC 415
Query 61 CTCCTGGTTCTAAGAAAATGTTTTGGCGGTCTGCCTCTTGGTCTGCTTCACGGACTGCAT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTCCTGGTTCTAAGAAAATGTTTTGGCGGTCTGCCTCTTGGTCTGCTTCACGGACTGCAT 475
Query 121 CACAAGTTCCTGAGGGTGAGGAGCAAAGTCTCAACATTCCCTGTGCAAATAGTTCTGGGC 180
||||||||||||||||||| |||||||| || |||||||| ||||| | |||||||||||
Sbjct 476 CACAAGTTCCTGAGGGTGATGAGCAAAGCCTGAACATTCCGTGTGCTATTAGTTCTGGGC 535
Query 181 CAAGCCGAAGATGCCCAGCTGCTCCTTTAACACCTCGTTCACATCATAACAGCAAGGCTA 240
| || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 536 CGAGTCGAAGATGTCCAGCTGCTCCTTTGACACCTCGTTCACATCATAACAGCAAGGCTA 595
Query 241 GAGCTTGTTTGCCACCATTGCAGCCTCTTTCCATTTCTAGGAGGAGCTTAGATGAGTGGC 300
||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||
Sbjct 596 GAGCTTGTTTGCCACCATTGCAGCCTCTTGCCATTTCTAGGAGGAGCTTAGACGAGTGGC 655
Query 301 CTAAGGCGGGCTCCGATGATGTCGGTGAGTGGCCTCATCCACCAACACCTAGCGGGAACA 360
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 CTAAGGCGGGTTCGGATGATGTCGGTGAGTGGCCTCATCCACCAACACCTAGCGGGAACA 715
Query 361 AAACTGGGGAGAGATTGAAGCTTGATTTATCATCAACGCAGCAGCGGGTCTCAGATAAGA 420
|||| ||||||||||||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 716 AAACCGGGGAGAGATTGAAGCTCGATTTATCATCAACGCAGCAGCGGGTAACAGATAAGA 775
Query 421 GCTCTGGTCTTGCTAAGAGGGAGAAGATTGCTTACTTTGATAAAGAATGTTCAAAGGTTG 480
|||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 776 GCTCTGGTCTAGCTAAGAGGGAGAAGATTGCTTTCTTTGATAAAGAATGTTCAAAGGTTG 835
Query 481 CTGATCATATATATGTGGGTGGAGATGCTGTGGCGAAAGACAAGAGCATATTGAAAAACA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 836 CTGATCATATATATGTGGGTGGAGATGCTGTGGCGAAAGACAAGAGCATACTGAAAAACA 895
Query 541 ATGGAATCACGCATATCCTAAACTGCGTTGGTTTTATCTGTCCGGAATATTTCAAGTCTG 600
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 896 ATGGAATCACGCATATCTTGAACTGCGTTGGTTTTATCTGTCCGGAATATTTCAAGTCTG 955
Query 601 ATTTTTGTTACAGATCCTTGTGGTTACAGGATAGTCCGTCAGAGGATATAACAAGTATTC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 956 ATTTTTGTTACAGATCCTTGTGGTTACAGGATAGTCCGTCAGAGGATATAACTAGTATTC 1015
Query 661 TGTACGATGTGTTTGACTACTTTGAAGATGTAAGGGAGCAAAGTGGAAGGATCTTTGTTC 720
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1016 TGTACGATGTGTTTGACTACTTTGAAGATGTGAGGGAGCAAAGTGGAAGGATCTTTGTTC 1075
Query 721 ATTGTTGTCAAGGGGTTTCACGATCTACCTCGTTGGTAATAGCATATCTGATGTGGAGAG 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 ATTGTTGTCAAGGGGTTTCACGATCTACCTCGTTGGTAATAGCATATCTGATGTGGAGAG 1135
Query 781 AAGGGCAAAGTTTTGATGATGCATTTCAGTATGTGAAGTCTGCTAGAGGTATTACTGATC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1136 AAGGGCAAAGTTTTGATGATGCATTTCAGTATGTGAAGTCTGCTAGAGGTATTGCTGATC 1195
Query 841 CTAACATGGGCTTTGCTTGCCAATTGTTACAATGCCAAAAGAGGGTTCATGCGTTCCCCC 900
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1196 CTAACATGGGCTTTGCTTGCCAATTGTTACAATGCCAAAAGAGGGTTCATGCGTTCCCGC 1255
Query 901 TTAGCCCTACTTCCTTACTTAGAATGTACAAAATGTCTCCACACTCTCCTTATGATCCTT 960
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1256 TTAGCCCTACCTCCTTACTTAGAATGTACAAAATGTCTCCACACTCTCCTTATGACCCTT 1315
Query 961 TGCATCTTGTTCCAAAACTGTTGAATGATCCATGCCCGTCTTCTCTGGATTCAAGAGGTG 1020
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1316 TGCATCTTGTTCCAAAACTGTTGAATGATCCATGCCCGGGTTCTCTGGATTCAAGAGGTG 1375
Query 1021 CATTTATCATTCAGTTACCTTCTGCAATTTACATTTGGGTTGGTAGGCAGTGTGAAATCA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1376 CATTTATCATTCAGTTACCTTCTGCAATTTACATTTGGGTTGGTAGGCAGTGTGAAACCA 1435
Query 1081 TCATGGAAAAAGATGCAAAAGCTGCTGTTTGTCAGATTGCTCGATATGAGAAAGTCGAAG 1140
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1436 TCATGGAGAAAGATGCAAAAGCTGCTGTTTGTCAGATTGCTCGATATGAGAAAGTCGAAG 1495
Query 1141 CACCTATTATGGTGGTCAGAGAAGGCGATGAGCCTGCTTATTACTGGGACGCTTTTGCAA 1200
||||||||||||||||||||||||| |||||||||| |||||||||||| || |||||||
Sbjct 1496 CACCTATTATGGTGGTCAGAGAAGGTGATGAGCCTGTTTATTACTGGGATGCATTTGCAA 1555
Query 1201 GCATTTTGCCTATGATTGGGGGCTCGGTAATTAAAGTTCAGCCAGGTGACAGGAAGGTCG 1260
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1556 GCATTTTGCCTATGATTGGGGGCTCGGTAATTAAAGTTCAACCAGGTGACAGGAAGGTCG 1615
Query 1261 ACGCATATAATCTGGATTTTGAGATTTTCCAGAAAGCCATCGAGGGAGGTTTTGTGCCAA 1320
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1616 ACGCATATAATCTGGATTTTGAGATTTTTCAGAAAGCCATAGAGGGAGGTTTTGTGCCAA 1675
Query 1321 CTTTAGCATCATCCAACAACGAACATGAGACTCATCTTCCTGCAAGGGAAAACAGTTGGA 1380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1676 CTTTAGCATCATCCAACAACGAACATGAGACTCATCTTCCTGCAAGGGAAAACAGTTGGA 1735
Query 1381 GCTCACTGAAATGTAAGTTTGCATCAAGGTTTGAGAAGGGTTTTCGGTATGTCTCCAAAA 1440
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 1736 GCTCACTGAAATGTAAGTTTGCATCAAGGTTTGACAAAGGTTTTCGGTATGTCTCCAAAA 1795
Query 1441 CGCCACTATCTAGGGTCTATTCTGATTCGATGCTGATCGTGCATTCATCAGGCTCACCTT 1500
|||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||
Sbjct 1796 CGCCACTATCTAGGGTCTATTCAGATTCGATGATGATCGTGCATTCATCAGGCTCACCTT 1855
Query 1501 CCTCTACAACTTCTTCGTCATCCACTGCGTCACCTCCTTTTCTTTCTCCTGATTCTGTAT 1560
|||| ||||||||||| |||||||||||||| ||||||||||| ||||| ||||||||||
Sbjct 1856 CCTCAACAACTTCTTCATCATCCACTGCGTCGCCTCCTTTTCTCTCTCCCGATTCTGTAT 1915
Query 1561 GTTCAACAAATTCAGGCAATAGCTTAAAGAGTTTCTCACAATCCTCTGGGCGCTCGTCCT 1620
||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||
Sbjct 1916 GTTCAACAAATTCAGGCAATAGCTTAAAGAGTTTCTCTCAATCCTCTGGACGTTCGTCCT 1975
Query 1621 TGAGACCTTCTATTCCACCATCGTTGACATTGCCCAAATTTTCCAGCCTATCTCTCCTCC 1680
||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||
Sbjct 1976 TGAGACCTTCTATTCCACCATCGCTGACATTGCCTAAATTTTCCAGCCTATCCCTCCTCC 2035
Query 1681 CTTCCCAAACTTCTCCTAAAGAATCTGGTGGTGTCAATAATTTTCTACAGCCTTACATTG 1740
|||||||||||||||||||||||||| |||||||||||| |||||| | ||
Sbjct 2036 CTTCCCAAACTTCTCCTAAAGAATCTCGTGGTGTCAATACTTTTCT------T--CA--- 2084
Query 1741 AACCGTCACCAAATAGAAAGGCTTCACCTTCTCTTGCAGAGCGTAGAGGCAGTCTCAAAG 1800
| ||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 2085 A-CCGTCACCAAATAGAAAGGCTTCACCTTCTCTTGCTGAGCGTAGAGGCAGCCTGAAAG 2143
Query 1801 GATCTCTAAAGTTGCCAGGTTTGGCTGATTCCAACAGAGGCACACCTGCTTTTACTTTAC 1860
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2144 GATCTCTGAAGTTGCCAGGTTTGGCTGATTCCAACAGAGGCACACCTGCTTTTACTTTAC 2203
Query 1861 ATCCGGATGATAGTAATGACATAGTCTTTAA-CTTGGAGGGTATTAGAAATGGTGATCTA 1919
|||||||||||||||||||||||||||| || || ||||||||||||||| || ||||||
Sbjct 2204 ATCCGGATGATAGTAATGACATAGTCTTCAATCT-GGAGGGTATTAGAAACGGCGATCTA 2262
Query 1920 AATCCACCAAGTGATTGCAAGGGGACAAGTGTAGATTCAGATTTGGCACAGAAGGAAATT 1979
||||||||||||||||||| |||||||||||||||||||||||| || |||||||||||
Sbjct 2263 TATCCACCAAGTGATTGCAAAGGGACAAGTGTAGATTCAGATTTGCCAGAGAAGGAAATT 2322
Query 1980 ATATCCTTAATTAGTTGCAGTAAATCTGACAGACACAAATCGGGAGGTGATA---A--G- 2033
||||||||||| |||||||||||||||||||||||||||||||||||||||| | |
Sbjct 2323 ATATCCTTAATCAGTTGCAGTAAATCTGACAGACACAAATCGGGAGGTGATACTGATAGC 2382
Query 2034 TCGGGCCAGCCTTTAGCATGTCGGTGGCCAAGTATGGAGATGATTACAAGACTGAGTAGA 2093
|| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| |||
Sbjct 2383 TCTGGCCAGCCTTTAGCATGTCGTTGGCCAAGTATGGAGATGATTACAAAACTGAGCAGA 2442
Query 2094 GCTTACTTAGATTCAGAATCTGTTATAGCAATCCCGTTGCCAAGTGATGCCGTAGGAGAA 2153
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2443 GCTTACTTAGATTCAGAATCTGTTATAGCAATCCCGTTGCCAAGTGATGCTGTAGGAGAA 2502
Query 2154 ACGGGTAGTAGGATTTTGTACATTTGGATAGGAAAGTCATTCTCTTTGGATAACAACTGT 2213
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2503 ACGGGTAGTAGGAATTTGTACATTTGGATCGGAAAGTCATTCTCTTTGGATAACAACTGT 2562
Query 2214 TCTCTAATAGATAGCAACAAAGCCGCGGACACTATGGAGAATGTTGATTGGGTACAGATT 2273
|||||| |||||||||||||||| || |||||| |||||||||||||||||||||| |||
Sbjct 2563 TCTCTAGTAGATAGCAACAAAGCGGCAGACACTGTGGAGAATGTTGATTGGGTACAAATT 2622
Query 2274 GGTGAATCCATTTTGTCTCAGATGGACTTGCCAAAAGATACCCCTATAAAGATAGTTAGG 2333
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2623 GGTGAATCCATTTTGTGTCAGATGGACTTGCCAAAAGATACCCCTATAAAGATAGTTAGG 2682
Query 2334 GAAGCTGAGGATCAGACAGAGTTTCTTGCACTGCTGAGTGCGCTATAGCACCCACCCGCA 2393
||| ||||||||||||||||||| || ||||||||||| |||||||| ||||||||||||
Sbjct 2683 GAATCTGAGGATCAGACAGAGTTGCTAGCACTGCTGAGCGCGCTATAACACCCACCCGCA 2742
Query 2394 AGCTCTAC 2401
||||||||
Sbjct 2743 AGCTCTAC 2750
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119226294375
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5