BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg938467
Length=1007
Score E
Sequences producing significant alignments: (Bits) Value
AT3G55360.1 | Symbols: CER10, ECR, ATTSC13, TSC13 | 3-oxo-5-alp... 1655 0.0
> AT3G55360.1 | Symbols: CER10, ECR, ATTSC13, TSC13 | 3-oxo-5-alpha-steroid
4-dehydrogenase family protein | chr3:20520930-20523014
REVERSE LENGTH=1347
Length=1347
Score = 1655 bits (896), Expect = 0.0
Identities = 968/1004 (96%), Gaps = 0/1004 (0%)
Strand=Plus/Plus
Query 3 TCTCTCTCAATTTCCTCATCTGGGTCTTCCTCGTTTTCTCCGCTTTAGCACCATGAAGGT 62
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 107 TCTCTCTCAATTTCCTCATCTGGGTCTTCCTCGTTTGCTCCGCTTAAGCACCATGAAGGT 166
Query 63 CACCGTCGTCTCCCGCAGCGGCAGAGAAGTCCTCAAAGCTCCCCTCGATCTCCCCGATTC 122
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 167 CACCGTCGTCTCCCGCAGCGGCAGAGAAGTCCTCAAAGCTCCCCTTGACCTCCCCGATTC 226
Query 123 GGCAACTGTTGCTGATCTGCAAGAAGCGTTTCATAAGAGAGCTAAAAAGTTTTACCCATC 182
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 227 GGCGACTGTTGCTGATCTGCAAGAAGCGTTTCATAAGAGAGCTAAGAAGTTTTACCCGTC 286
Query 183 GAGGCAAAGACTGACTCTTCCCGTGGCTCCTGGATCGAAGGAGAAACCTGTTGTCCTCAA 242
||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 287 GAGGCAAAGACTGACTCTTCCCGTGACTCCTGGATCGAAGGACAAACCTGTTGTCCTCAA 346
Query 243 TAGCAAGAAATCACTCAAAGAGTACTGTGGTGGAAACACCAACTCCTTAACTGTAGTCTT 302
||||||||||||||| || |||||||||| |||||||| |||||||||||||||||||||
Sbjct 347 TAGCAAGAAATCACTGAAGGAGTACTGTGATGGAAACAACAACTCCTTAACTGTAGTCTT 406
Query 303 CAAAGACTTGGGGGCACAAGTTTCCTACCGCACGCTCTTCTTCTTCGAGTATCTTGGCCC 362
||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 407 CAAAGACCTGGGGGCACAAGTTTCCTACCGCACACTCTTCTTCTTCGAGTATCTTGGCCC 466
Query 363 TCTCCTTATCTACCCGGTCTTTTACTACTTCCCTGTTTACAAATTCCTTGGCTATGGAGA 422
||||||||||||||| |||||||||||||||||||||||||| || ||||| ||||||||
Sbjct 467 TCTCCTTATCTACCCTGTCTTTTACTACTTCCCTGTTTACAAGTTTCTTGGTTATGGAGA 526
Query 423 GGACCGTGTGATCCATCCGGTCCAGACGTACGCTATGTACTACTGGTGCTTTCACTACTT 482
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 527 GGACTGTGTGATCCATCCGGTCCAGACGTACGCTATGTACTACTGGTGCTTTCACTACTT 586
Query 483 CAAACGAATCCTAGAAACATTTTTCGTTCATCGGTTCAGCCACGCAACCTCCCCAATCGC 542
|||||| ||| ||||||| |||||||| |||||||||||||||||||||||||||||||
Sbjct 587 CAAACGGATCTTAGAAACGTTTTTCGTACATCGGTTCAGCCACGCAACCTCCCCAATCGG 646
Query 543 GAATGTGTTCAGGAACTGTGCTTATTACTGGAGCTTTGGTGCTTACATTGCTTATTACGT 602
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 647 GAATGTGTTCAGGAACTGTGCTTATTACTGGAGCTTTGGTGCTTACATTGCTTATTACGT 706
Query 603 CAACCATCCCTTGTACACTCCAGTCAGTGACCTTCAGATGAAGATTGGTTTCGGGTTTGG 662
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 707 CAACCATCCCTTGTACACTCCAGTTAGTGACCTTCAGATGAAGATTGGTTTCGGGTTTGG 766
Query 663 TTTGGTCTGCCAAGTCGCAAACTTTTACTGTCACATTTTGCTGAAGAATCTTAGGGACCC 722
|||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 767 TTTGGTTTGCCAAGTCGCAAACTTTTACTGTCACATATTGCTGAAGAATCTGAGGGACCC 826
Query 723 CAATGGGTCTGGAGGCTACCAGATTCCACGCGGTTTCCTCTTCAACATTGTTACATGTGC 782
|| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 827 CAGTGGGGCTGGAGGCTACCAGATTCCACGCGGTTTCCTCTTCAACATTGTTACATGTGC 886
Query 783 CAATTACACGACCGAGATTTACCAATGGCTAGGATTCAACATCGCTACTCAGACTGTTGC 842
||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 887 CAATTACACTACCGAGATTTACCAATGGCTAGGATTCAACATCGCTACTCAGACCATTGC 946
Query 843 AGGATATGTTTTCCTCGCTGTTGCTGCTCTAATCATGACTAATTGGGCTCTTGGAAAGCA 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 947 AGGATATGTTTTCCTCGCTGTTGCTGCTCTAATCATGACTAATTGGGCTCTTGGAAAGCA 1006
Query 903 CAGCCGTCTGAGAAAGATATTTGATGGAAAAGATGGAAAACCAAAGTATCCAAGAAGATG 962
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1007 CAGCCGTCTGAGAAAGATATTTGATGGAAAAGATGGAAAGCCAAAGTATCCAAGAAGATG 1066
Query 963 GGTGATACTTCCTCCATTCCTTTAGAAGCCATTGTCGCTTATCA 1006
||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1067 GGTGATACTTCCTCCATTCCTTTAGAAGCCATTGTTGCTTATCA 1110
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49329932354
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5