BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg938469

Length=546
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G55380.2 | Symbols: UBC14 | ubiquitin-conjugating enzyme 14 ...   612    1e-174


> AT3G55380.2 | Symbols: UBC14 | ubiquitin-conjugating enzyme 14 
| chr3:20531407-20533173 FORWARD LENGTH=997
Length=997

 Score =  612 bits (331),  Expect = 1e-174
 Identities = 357/370 (96%), Gaps = 0/370 (0%)
 Strand=Plus/Plus

Query  1    TCTCTCAAGCGAGCCTGTGACGATGGCTAATAATCAAGCAAGCCTTCTTCTGCAGAAACA  60
            |||||| | ||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  92   TCTCTCGATCGACCCTGTGACGATGGCTAATAACCAAGCAAGCCTTCTTCTGCAGAAACA  151

Query  61   GCTTAAAGATCTGTGTAAGAAACCTGTGGATGGTTTCTCTGCTGGGCTCGTTGATGAGAA  120
            ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct  152  GCTTAAAGATCTGTGTAAGAAACCTGTTGATGGTTTCTCTGCTGGCCTCGTTGATGAGAA  211

Query  121  GAACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTATGAAGGTGG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  212  GAACGTTTTCCAATGGAGCGTCTCTATTATGGGTCCTCCTGATACTTTGTATGAAGGTGG  271

Query  181  tttttttAATGCAATTATGTCGTTTCCGGATAATTATCCAGTTGAACCACCAACTGTGAC  240
             ||||||||||||||||||||||||||||| ||||||||||||  |||||||||||||||
Sbjct  272  CTTTTTTAATGCAATTATGTCGTTTCCGGAGAATTATCCAGTTTCACCACCAACTGTGAC  331

Query  241  GTTCACCTCGGAGATGTGGCATCCTAATGTTTATTCTGATGGAAAAGTTTGCATTTCTAT  300
            ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  332  GTTTACCTCGGAGATGTGGCATCCTAATGTTTATTCTGATGGAAAAGTTTGCATTTCTAT  391

Query  301  TCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCAGAACGTTGGACTCC  360
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct  392  TCTTCATCCTCCTGGTGATGATCCTCATGGATACGAGCTTGCCTCTGAACGTTGGACCCC  451

Query  361  TGTCCATACG  370
            ||||||||||
Sbjct  452  TGTCCATACG  461


 Score =  296 bits (160),  Expect = 1e-79
 Identities = 168/172 (98%), Gaps = 0/172 (0%)
 Strand=Plus/Plus

Query  375  AAAGCATTGTGTTGAGTATCATATCGATGCTCTCAGGTCCCAACGACGAGTCACCGGCGA  434
            |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct  568  AAAGCATTGTGTTGAGTATCATATCGATGCTCTCAGGTCCCAACGATGAGTCACCAGCGA  627

Query  435  ATGTGGAAGCTGCAAAGGAATGGAGAGACAACAGAGCAGAGTTTAGGAAGAAAGTGAGTC  494
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  628  ATGTGGAAGCTGCAAAGGAATGGAGAGACAACAGAGCAGAGTTTAGGAAGAAAGTGAGTC  687

Query  495  GCTGTGTCAGAAGATCGCAAGAGATGCTATGAACATCTCTCCTGCGTTTTTT  546
            ||||||| |||||||||||||||||||||||||||||||||| |||||||||
Sbjct  688  GCTGTGTGAGAAGATCGCAAGAGATGCTATGAACATCTCTCCAGCGTTTTTT  739



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26171990587


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5